Gene Information

Name : PPS_3636 (PPS_3636)
Accession : YP_004703059.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Virulence
Product : siderophore biosynthesis protein
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1670
EC number : -
Position : 4109557 - 4110570 bp
Length : 1014 bp
Strand : -
Note : -

DNA sequence :
ATGCCGTTCGATGCCGCATCACAGCCCCAGTCAGCGCCACGCTGGCGCAGCCTCAGTGCCGAGGAGGGTGACAGCTGGCT
GAGCCTCTCCCTCGAAGGCCGCGCGTTGATCCAGTTGCGCCTGGAGATGGGTGCTACTCTGCATGTCCACCTCGAGCGGC
TGTGCCCCGAGCGCCCCTATGTGGCCTTGTGGGCCGCCTGTTATTGGCTGCTGGCCCGCGATGCGGCCTGCCAGCGTCTT
GCCTGGCACCTGCCTGAGCCGTTGCCTCAGGCATTGACCAGTGGCCTGCTGCTGGCCGGCGACCAGCCTGGTCAATACCT
GTGCGAGCGGGCGCTGTTCTGGCAGCTGCCACAGCCGTGGTTGGGCGAGTCGGCCAGCGTCGCCTACCCACAGCAGATGC
AGATCAGCAACGGCAAGCGCCACCCCCGCCGCGCGCCCAAGCCTCGTGGCGAGGTGTACCGGCGCTTCGATACGCGCCTG
GGCAGTTGGGTATCGCTGCGTACCTTGGAGATCGAGCATGACCTGGAGCGCTTCAACCGCTGGCAGAACAACCCGCGGGT
GGAGACGTTCTGGCAGGAGGGTGGAACCCTTGCGCAGCATCGCGAATACCTGGGCAAGCTCGAGGCCGACCCGCATGCCC
TGACGCTGATCGGTTGCTTCGATGACCAGCCGTTTGCCTACTTCGAGGCGTACTGGGCCAAGGAGGACCGCATTGCGCCG
TTCTACCCGGCCGATGACTACGACCGTGGCATCCACATGCTGGTGGGGGAGGAGAGCCACCGCGGGCCGCACAAGGTGGC
CAGCTGGCTATCGGCGCTGGTGCACTACCTGTTCCTGGATGACCCACGCACCCAGCGGGTGGTGGCCGAGCCGCGTGCCG
ACAACGGCAAGATGATCGGCTACATGCACGACCAGTGCTTCCATTGCGACAAGGAGTTCGACTTCCCGCACAAGCGTGCG
GCGTTGATGATTCTGGGGCGGGAACGGTTTTTCGATAAGTGTAAATTGGCTTGA

Protein sequence :
MPFDAASQPQSAPRWRSLSAEEGDSWLSLSLEGRALIQLRLEMGATLHVHLERLCPERPYVALWAACYWLLARDAACQRL
AWHLPEPLPQALTSGLLLAGDQPGQYLCERALFWQLPQPWLGESASVAYPQQMQISNGKRHPRRAPKPRGEVYRRFDTRL
GSWVSLRTLEIEHDLERFNRWQNNPRVETFWQEGGTLAQHREYLGKLEADPHALTLIGCFDDQPFAYFEAYWAKEDRIAP
FYPADDYDRGIHMLVGEESHRGPHKVASWLSALVHYLFLDDPRTQRVVAEPRADNGKMIGYMHDQCFHCDKEFDFPHKRA
ALMILGRERFFDKCKLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iucB YP_002414045.1 aerobactin siderophore biosynthesis protein, N(6)-hydroxylysine acetylase Virulence Not named Protein 8e-51 46
iucB NP_839222.1 siderophore biosynthesis protein Virulence SHI-2 Protein 5e-51 46
iucB NP_709455.1 siderophore biosynthesis protein Virulence SHI-2 Protein 5e-51 46
iucB AAK71632.1 IucB Virulence SHI-3 Protein 4e-51 46
iucB AAD44747.1 IucB Virulence SHI-2 Protein 3e-51 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_3636 YP_004703059.1 siderophore biosynthesis protein VFG1082 Protein 2e-51 46
PPS_3636 YP_004703059.1 siderophore biosynthesis protein VFG0939 Protein 3e-51 46
PPS_3636 YP_004703059.1 siderophore biosynthesis protein VFG0616 Protein 2e-51 46