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Name : PPS_3537 (PPS_3537) Accession : YP_004702962.1 Strain : Pseudomonas putida S16 Genome accession: NC_015733 Putative virulence/resistance : Virulence Product : lysine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : - Position : 3978375 - 3980657 bp Length : 2283 bp Strand : - Note : - DNA sequence : ATGGACGCCATGTCCTTCGGAGGTAGCCACCTGATGTACAAGGACCTCAAGTTCCCCATCCTCATCGTGCACCGCGCCAT CAAGGTTGACAGCGTCGCTGGCGAGCGTGTGCGGGGCATCGCCGAGGAACTGCGCCAGGACGGCTTTGCCATCCTCGCCG CCGCCGACCATGCCGAGGCCTGCCTTGTCGCTGCCACCCACCATGGCCTGGCCTGCATGCTGATTGCCGCCGAGGGCGTC GGCGAGAATACCCACCTGCTGCAGAACATGGCCGAGCTGATCCGCCTGGCCCGCCTGCGCGCCCCCAACCTGCCGATTTT CGCCTTGGGCGAACAGGTGACCCTGGAAAACGCCCCCGCCGAAGCCATGAGCGAGCTCAACCAGTTGCGGGGCATCCTCT ACCTGTTCGAAGACACCGTGCCGTTTCTTGCGCGCCAGGTGGCGCGTGCCGCACATATCTACCTGGACGGCCTGCTGCCG CCGTTCTTCAAGGCCCTGGTGCAGCACACCGCGCAGTCCAATTATTCCTGGCACACCCCGGGGCACGGCGGCGGCGTGGC CTATCGCAAAAGCCCAGTGGGCCAGGCCTTTCACCAGTTCTTCGGGGAAAACACCCTACGCTCGGACCTGTCCGTTTCCG TGCCCGAGCTGGGCTCGCTGCTCGATCACACCGGCCCCTTGGCCGAAGCCGAAGCCAGGGCTGCGCGCAACTTTGGCGCC GACCACACCTTTTTCGTCATCAACGGCACCTCCACGGCCAACAAGATCGTCTGGCACGCCATGGTCGGCCGCGACGACCT GGTGCTGGTGGACCGCAACTGCCACAAGTCGGTGGTGCATGCGATCATCATGACCGGTGCCATTCCCCTCTATTTGTGCC CCGAGCGCAACGAACTCGGGATCATCGGCCCGATCCCGCTCAGCGAGTTCAGCCCCGAGGCGATCCAGGCGAAGATCCAG GCCAACCCTCTTGCCCGCGATCGCGGGCAGCGCATCAAGCTGGCGGTGGTGACCAACTCCACCTACGACGGCCTGTGCTA CCACGCCGGGCTGATCAAGCAGACCCTGGGCGCCAGTGTCGAGGTGCTGCACTTCGACGAAGCCTGGTTCGCCTATGCGG CATTCCACGAGTTCTTTACCGGGCGCTATGCCATGGGCACGGCCTGCGCGGCAGACAGCCCGCTGGTGATCAGCACCCAT TCCACCCACAAGCTGCTGGCCGCGTTCAGCCAGGCCTCGATGATTCATGTGCAGGACGGGGCCAGGCGCCAGCTGGACCG TGACCGCTTCAACGAAGCGTTCATGATGCACATCTCGACCTCGCCGCAGTACAGCATCCTCGCTTCGCTGGACGTGGCCT CGACCATGATGGAAGGCCCGGCCGGGCGTTCGCTGCTGCAAGAAATGTTCGACGAGGCGCTGAGCTTTCGCCGTGCCCTG GCCAACCTGCGCGAGCACATCGCCGCCGACGACTGGTGGTTCAGCATCTGGCAGCCGCCGAGCGCCGAAGGCATCCACCG CCTGGCGGCGCAGGACTGGCTGCTGCAGCCGGGGGCGGAGTGGCACGGCTTTGGCGAAGTGGCGGACGACTATGTGCTGC TCGACCCGCTGAAGGTGACCCTGGTGATGCCGGGCCTGAGCGCGGGCGGTGCACTGGGCGAGCATGGCATCCCGGCGGCA GTGGTCAGCAAGTTTCTCTGGGAGCGGGGGCTGGTGGTGGAGAAAACCGGCCTGTACAGCTTTCTGGTGCTGTTCTCCAT GGGCATCACCAAGGGCAAGTGGAGCACCTTGCTCACCGAGTTGCTGGAGTTCAAGCGCCACTATGATGGCAATACCGCCC TGAGCAACTGCCTGCCGAGCGTGGTGGCTGCCGATGCCTCACGCTATCAGGGCATGGGCCTGCGCGACCTGTGCGACCAG TTGCATGGCTGCTACCGCGCCAATGCCACGGCCAAGCAACTGAAACGGTTGTTCACGCGCTTGCCGGAGGTAGCCGTGAG CCCGGCCCGGGCCTATGACCAGATGGTGCGCGGTGAGGTGGAGGCGGTGCCGATCGAGGCGCTGCTGGGGCGGGTGGCAG CGGTGATGCTGGTGCCGTACCCGCCTGGTATTCCATTGATCATGCCGGGGGAGCGGTTTACCGAGGCGACCCGCTCGATA GTCGATTACCTGGCCTTCGCCCGGGCGTTCAACCAGGGCTTCCCAGGTTTCGTCGCCGACGTGCACGGCCTGCAGAATGA AAGCGGCCGCTACACGGTGGACTGCATCAAGGAATGCGAATGA Protein sequence : MDAMSFGGSHLMYKDLKFPILIVHRAIKVDSVAGERVRGIAEELRQDGFAILAAADHAEACLVAATHHGLACMLIAAEGV GENTHLLQNMAELIRLARLRAPNLPIFALGEQVTLENAPAEAMSELNQLRGILYLFEDTVPFLARQVARAAHIYLDGLLP PFFKALVQHTAQSNYSWHTPGHGGGVAYRKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEARAARNFGA DHTFFVINGTSTANKIVWHAMVGRDDLVLVDRNCHKSVVHAIIMTGAIPLYLCPERNELGIIGPIPLSEFSPEAIQAKIQ ANPLARDRGQRIKLAVVTNSTYDGLCYHAGLIKQTLGASVEVLHFDEAWFAYAAFHEFFTGRYAMGTACAADSPLVISTH STHKLLAAFSQASMIHVQDGARRQLDRDRFNEAFMMHISTSPQYSILASLDVASTMMEGPAGRSLLQEMFDEALSFRRAL ANLREHIAADDWWFSIWQPPSAEGIHRLAAQDWLLQPGAEWHGFGEVADDYVLLDPLKVTLVMPGLSAGGALGEHGIPAA VVSKFLWERGLVVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRHYDGNTALSNCLPSVVAADASRYQGMGLRDLCDQ LHGCYRANATAKQLKRLFTRLPEVAVSPARAYDQMVRGEVEAVPIEALLGRVAAVMLVPYPPGIPLIMPGERFTEATRSI VDYLAFARAFNQGFPGFVADVHGLQNESGRYTVDCIKECE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 3e-127 | 42 |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 2e-124 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PPS_3537 | YP_004702962.1 | lysine decarboxylase | VFG1670 | Protein | 2e-127 | 42 |
