Gene Information

Name : PPS_3004 (PPS_3004)
Accession : YP_004702433.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3369398 - 3370078 bp
Length : 681 bp
Strand : +
Note : -

DNA sequence : 
ATGCCTCGCGTACTGACCATCGAAGACGACGCCGTCACCGGCCAGGAAATCGTCGCCGAACTTACCAGCCACGGCCTTGA
GGTGGATTGGGCCGACAATGGCCGTGAAGGCCTGGCCAAGGCCATTGCCGGCGGCTACGACCTGATCACTCTGGACCGCA
TGCTGCCCGAGGTCGATGGCCTGACCATCGTCACCACGCTGCGCAACCTCAAGATTGCCACGCCGATCCTGATGATCAGC
GCCCTCTCCGACGTCGACGAGCGGGTGCGCGGCCTGCGTGCCGGGGGTGACGACTACCTGACCAAACCGTTCGCCTCCGA
CGAGATGGCCGCGCGGGTCGAAGTGCTGCTGCGCCGCAACAGCGTGCCCATGACCCAGACCCGCCTGCAGGTCGCCGACC
TGCAACTGGACCTGATTAGCCACGAAGCCCGCCGTGGCGAACAGACCCTCAACCTGCTGCCCACCGAATACAAGCTGCTG
GAGTACCTGATGCGCCATAGCGGCCAGGTGATCACGCGGATGATGATTTTCGAGGAAGTCTGGGGCTACCACTTCGACCC
GGGCACCAACCTGATCGACGTACACATCGGTCGCCTGCGCAAGAAAATCGACTCGCCCGGCCAGTCGCCGCTGATCCGTA
CGGTACGGGGCTCCGGCTATGCCATTGCTGAACCCGTCTAA

Protein sequence : 
MPRVLTIEDDAVTGQEIVAELTSHGLEVDWADNGREGLAKAIAGGYDLITLDRMLPEVDGLTIVTTLRNLKIATPILMIS
ALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSVPMTQTRLQVADLQLDLISHEARRGEQTLNLLPTEYKLL
EYLMRHSGQVITRMMIFEEVWGYHFDPGTNLIDVHIGRLRKKIDSPGQSPLIRTVRGSGYAIAEPV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-33 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_3004 YP_004702433.1 two component transcriptional regulator BAC0111 Protein 3e-46 46
PPS_3004 YP_004702433.1 two component transcriptional regulator BAC0347 Protein 1e-41 44
PPS_3004 YP_004702433.1 two component transcriptional regulator BAC0125 Protein 2e-40 44
PPS_3004 YP_004702433.1 two component transcriptional regulator BAC0197 Protein 4e-38 43
PPS_3004 YP_004702433.1 two component transcriptional regulator BAC0308 Protein 7e-39 42
PPS_3004 YP_004702433.1 two component transcriptional regulator BAC0083 Protein 1e-40 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_3004 YP_004702433.1 two component transcriptional regulator VFG0596 Protein 6e-34 41
PPS_3004 YP_004702433.1 two component transcriptional regulator VFG1389 Protein 3e-32 41