Gene Information

Name : PPS_2889 (PPS_2889)
Accession : YP_004702318.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Virulence
Product : resolvase domain-containing protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1961
EC number : -
Position : 3214275 - 3214823 bp
Length : 549 bp
Strand : -
Note : -

DNA sequence :
ATGGACATTGGCTATATCCGGGTGTCGAGCATTGACCAGAACACCGAGCGCCAGCTCGGCGGGGTGAAGCTTGACCAGAT
ATTCACCGACAAGGTGAGCGGCGGTACCACGAACAGGCCGCAGATGGCCGAGATGCGACGATCATTGCGAGAAGGCGATA
CGGTGCATGTGCACAGCATCGACCGCCTGGCGCGCTCCCTGAGCGATCTGCTGGGGCTGGTCGAAGAGTTCCGTGCCAAG
GGCGTGGTCCTGCGATTCCACAAGGAGAACCTGACGTTCACCGGGCAGATCGACCCGATGCAGGACCTGATGTTGCAGAT
GATGGGCGCGGTGGCACAGTTTGAGCGGGCGCTGATTCGCGAACGCCAGGCCGAGGGCATCGCCAAGGCCAAGGAGGCCG
GCGTCTATGAACGGCGGTCTGCGGCCAAGGGTGATGCTGCGATCATCCAGGCGATCAACAATGGCATGTCGTACAGGAAG
ACCGCCGAGCACCTGGGTGTGTCACTGAGCACAGTGGCGCGGGTGATGAAGGCCGCGTCGACAGAATGA

Protein sequence :
MDIGYIRVSSIDQNTERQLGGVKLDQIFTDKVSGGTTNRPQMAEMRRSLREGDTVHVHSIDRLARSLSDLLGLVEEFRAK
GVVLRFHKENLTFTGQIDPMQDLMLQMMGAVAQFERALIRERQAEGIAKAKEAGVYERRSAAKGDAAIIQAINNGMSYRK
TAEHLGVSLSTVARVMKAASTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpR YP_006098373.1 transposon Tn21 resolvase Not tested Tn2411 Protein 5e-33 59
tnpR AAL08439.1 resolvase TnpR Not tested SRL Protein 3e-33 59
tnpR AFV53121.1 Tn21 resolvase Not tested AbGRI2-1 Protein 3e-33 59
tnpR ACY75537.1 TnpR Not tested Tn6060 Protein 3e-33 58
res YP_005124341.1 DNA-invertase Not tested Not named Protein 3e-25 52
sin YP_254225.1 recombinase Sin Not tested ¥ðSh1 Protein 2e-14 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_2889 YP_004702318.1 resolvase domain-containing protein VFG1030 Protein 1e-33 59