|
Name : PPS_2364 (PPS_2364) Accession : YP_004701805.1 Strain : Pseudomonas putida S16 Genome accession: NC_015733 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 2654552 - 2656531 bp Length : 1980 bp Strand : - Note : - DNA sequence : ATGCGCCTCTACATTTGCGAAAAACCGTCCCAAGCCCGCGATATCGCCCGGGTGCTGCAAGCCCATCGTCGCGGCGATGG CTACCTGCAGGGCATCGGAGTGACCGTGACCTGGTGCGTGGGCCACCTGCTCGAGACTGCGCCACCGGAAACCTATAGCG ACCAGTTCAAGCGCTGGTCGCTGGAGCACCTGCCGATTATCCCGCAGCACTGGCAACTGGTGGTGAAGCCCAAGGTCGCC GCGCAGTTGAAGGCCATCAGCCGGCTGCTGCAGGCCTGCGCCGAGGTGGTGATTGCCACCGACGCTGACCGCGAGGGCGA GATGATTGCTCGGGAGATCCTCGAGCGCTGCCAGTATCAGGGGCCTATCCTTCGCCTGTGGCTGTCCGCCCTCGACGACG CTTCGATCCGTCGGGCCCTGACGGCGTTGCGGCCGGGTGAACAAACCCTGCCGCTGTACCACTGTGCCCTCGCCCGATCC CGGGCAGATTGGCTGGTGGGCATCAACCTCAGCCGATTGTTCACCCTGCTCGGTCGCCGCGCCGGCTTCGACGGCACGCT GCCCGTGGGCCGTGTGCAAACGCCCACCCTGCGCCTGGTAGTGGAGCGTGATCGCGCCATCGCCAGTTTCGTCGCCCGGC CTTTCTGGACCGTGGACGTTGTGCTGCACGCTGACGGGGCGGAGTTTGAGGCGCGCTGGCAGCCACCCGCTGCGCACTGC GATGATGCCGGTCACTGCGTTGATCAAGCGGCGGCCGAGCAGGTTGCCCGGCGCCTGGCAGCTGCGCGTTCAGTACAAGT GGAGCGGGTCGACGTTGAACGCGTGACGGAAGGGCCGCCCTTGCCGTTCGACTTGGGCACGCTGCAGGAAGTCTGTTCGG CCAAACTCGGCCTGGGCGCGCAGGAAACCCTCAGTGTGGCGCAGGCACTGTACGAAACCCACAAGGCCACCACCTACCCT CGCAGCGACTGTGGCTACCTGCCAGAGAGCATGCTGGACGAGGTGCCGCGCGTACTAAAGGCCTTGGCCGCAGCCGACCC GGCGCTTGCCCAGCGCTTCAAGGAATTCGATCCGACACGACGCTCCCGCGCCTGGAACAGCAGCAAAGTCACCGCCCACC ACGGCATCATCCCCACCCCCGTGGTGATCCCGCTGGATCAGTTGTCCGAGCGCGAGCGCGCCGTGTACACCCTGATCCGC GCCCGCTACCTGGCGCAGTTTCTGCCCCACCACGAATACCTGAAAACCCAGGTGCAGTTGCGCAGCCAGGCCGATCAGGT GCTGGCCCGCGGCAAGCAGATCCAGGTACGAGGCTGGAAGGCCGTGATCGACGAAACCGATGCCAGCGAACCGACCGAGC AAACGCAGCGGCTCCCCACCCTGCAAGACGGTGCGTCGGTTGCTGCACACGACGCCACGATCAATACACAGCGCACCCAA CCGCCCAAACCCTATACCGAAGGCACACTGGTCAAAGCGATGAAAACCATCGCCAACCAGGTGGCCGATATGCGCCTGAA GCAAACGTTGAAAGACAGCATTGGCATCGGCACCGAGGCCACCCGCGCCGCAATCATTCAGGGCCTGATCGATCACGGCT ACTTGACCAAGAAAAAGCGCAGCCTGGCGGCCTCTGCCGCCGCCCACACGTTGATCGAGGCCGTTCCCCGTGAGGTTGCT GATCCGGTGATGACCGCGCTGTGGGAGCAGGCACTGGCACGGATCGAGACCGGGCAGCTGAGTGTCGAGGCGTTTCTCGC CAAGCAATCGGCCTGGCTCACTCAGGTGGTGCGCAGCCAAGCCTCGTTGAACTTGCAGCTACCCCGTTCGAAAGGTCCAG CCTGCCCCGTGTGCCGAAGCCCCATGCGCCAGCGCAAAGGCCGCACCGGTAACTTTTGGTCCTGTGTGCGCTACCCAGAC TGCAAGGGTACTAAGCCAGTGAAAGCCAGCGCGGCGCCTGCCAAGCCGAAGCGCTCCTGA Protein sequence : MRLYICEKPSQARDIARVLQAHRRGDGYLQGIGVTVTWCVGHLLETAPPETYSDQFKRWSLEHLPIIPQHWQLVVKPKVA AQLKAISRLLQACAEVVIATDADREGEMIAREILERCQYQGPILRLWLSALDDASIRRALTALRPGEQTLPLYHCALARS RADWLVGINLSRLFTLLGRRAGFDGTLPVGRVQTPTLRLVVERDRAIASFVARPFWTVDVVLHADGAEFEARWQPPAAHC DDAGHCVDQAAAEQVARRLAAARSVQVERVDVERVTEGPPLPFDLGTLQEVCSAKLGLGAQETLSVAQALYETHKATTYP RSDCGYLPESMLDEVPRVLKALAAADPALAQRFKEFDPTRRSRAWNSSKVTAHHGIIPTPVVIPLDQLSERERAVYTLIR ARYLAQFLPHHEYLKTQVQLRSQADQVLARGKQIQVRGWKAVIDETDASEPTEQTQRLPTLQDGASVAAHDATINTQRTQ PPKPYTEGTLVKAMKTIANQVADMRLKQTLKDSIGIGTEATRAAIIQGLIDHGYLTKKKRSLAASAAAHTLIEAVPREVA DPVMTALWEQALARIETGQLSVEAFLAKQSAWLTQVVRSQASLNLQLPRSKGPACPVCRSPMRQRKGRTGNFWSCVRYPD CKGTKPVKASAAPAKPKRS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 5e-180 | 60 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 59 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 2e-180 | 57 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 2e-154 | 48 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 2e-154 | 48 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-154 | 48 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 9e-156 | 48 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 2e-139 | 47 |
