|
Name : PPS_2354 (PPS_2354) Accession : YP_004701795.1 Strain : Pseudomonas putida S16 Genome accession: NC_015733 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : R : General function prediction only COG ID : COG0433 EC number : - Position : 2646477 - 2648603 bp Length : 2127 bp Strand : - Note : - DNA sequence : ATGAGCGATCATGCGATGGAATCCCTGCTGCGCCCGGCAGTGGAGCTGTACACCGTGGGCATCTGTGCCGGTGCCGGCGC ACTGTGTCTGCATTCGCCCTGGGCGGTGGCGCTGTCACCGGAAATTGGCGCCGGCATGGCCCTGGCCTATACCGCCTTCG GCCTCAAGCGCCTCAATGAGGCCCGCATTGTCCTGCGTTATCGGCGCAATATCCGCCGCCTGCCCCGCTACTCGCTGACC AGCCGACAGATCCCGGTCAGCAGCAAGCGCCTGTTCATGGGTCGCGGCTTTCGCTGGAGCCGATTGCATACCCAGCGATT GCTGGAGGCGCAGGACCCCGCGCTCGCCCGCTACGTCAACCAGTCGAGCGCCTACCAGTGGGCCCGACGCCTGGAACACG TCCTGGAAAAAGCGCCACCAGGGCTCTCCCTCCTGCCCCGGATCACCGCCTGGGACAGCCCACTCAACCCGGTACGCCCA CTGCCGCCAGTGGGCGGTTCACCACTGCTGCATGGCGTCGAGCCCAACGAGCAGGAAGCCACCTTGCCACTGGGCGAACG CGTGGGCCATACCCTGGTGCTAGGCACCACGCGGGTCGGCAAAACGCGCCTGGCCGAGGTCTACATCACCCAGGACATTC ACCGGCCAAGCCGGGAAGTGGTGATCGTCTTCGACCCCAAAGGCGATGCCGACCTACTCAAACGTATGTACGTAGAAGCG CGACGGGCCGGCCGTGAACACGAGTTCTACGTCTTTCACCTAGGCTGGCCTGAGATTTCCGCGCGCTACAACGCCATCGG CCGCTTCGGGCGCATCTCGGAAGTGGCCACCCGTATCGCTGGCCAGCTAAGCGGTGAAGGCAACTCGGCAGCGTTTCGAG AGTTCGCCTGGCGCTTCGTCAACATCATCGCCCGGGCTCTGATCGAGCTCGGCCGGCGCCCTGATTACCTGCAGATCCAG CGGCACGTGGTGAACATCGATGGGCTGTTCATCGAATACGCCCAGCACTTCTTCGCCCGCCATGATCCGCAGGCATGGGA GACCATTGTTGATCTTGAGGCGCGGCTCAACGAAAAGAACGTGCCCAGGCACATGATTGGCCGCGAGAAACGTGTGGTCG CCATCGAGCAGTACCTGACCGCCAAGCGCCTCTTCGACCCGGTCATGGATGGCTTGCGTTCGGCCGTCCGCTACGACCGC ACCTACTTCGACAAGATCGTCGCCTCATTGCTGCCGCTGCTGGAAAAGCTCACCAGTGGCAAGACGGCGCAACTGCTGGC CCCCAACTATGCCGACCTGGAGGATCCACGGCCAATCTTCGACTGGCTGCAGGTCATCCGTAAACGCGGCATCGTCTACG TCGGCCTAGATGCGCTGTCCGATGCCGAGGTCGCCGCCGCCGTTGGTAACTCGATGTTTGCCGACCTGGTCTCCGTCGCC GGGCATATCTACAAACATGGCATCGACCACGGTCTCCCGAACTCCTCCAGCGAAGGCGACAAGGTGCCCATCAACCTCCA CGCCGACGAGTTCAACGAGCTGATGGGCGACGAGTTCATTCCTCTAATCAACAAGGGTGGTGGTGCCGGTATCCAGGTCA CCGCCTACACCCAGACCTTGAGCGACATCGAGGCGCGCATCGGCAGCCGGGCCAAAGCCGGCCAGGTCATCGGCAACTTC AACACCCTGCAAATGCTACGCGTACGGGAAACCGCGACCGCCGAGCTGCTGACCAATCAATTGCCCAAGGTCAACGTGCA GACCCGTACCCTGGTCTCTGGCGCGACGGACACCGCCGATCCCGACGCCCGCACCGACTTCACCTCCTCCTCGCAGGACC GGGTCACCACAACGTCGGTACCGCTGATCGAACCGGCGCACATTATCGCCTTGCCCAAGGGGCAGATGTTCTCGTTCCAG GAAGGCGGGCAACTGTGGAAGGTACGCATGCCGCTGCCAAAACCGGCCAGTGACGATGCGATGCCGGCTGACCTGCAGAC CCTGGCTGCGCGTATGCGCGAGTCCTACAACACTAATGCGGGGAGTTGGTGGGGCAGTGCCGGCGGTGCTCCGACGGTCA ATTTCGATCCCGAGATGCCGCCACCAGGACGCAAATCGGCCTCGTGA Protein sequence : MSDHAMESLLRPAVELYTVGICAGAGALCLHSPWAVALSPEIGAGMALAYTAFGLKRLNEARIVLRYRRNIRRLPRYSLT SRQIPVSSKRLFMGRGFRWSRLHTQRLLEAQDPALARYVNQSSAYQWARRLEHVLEKAPPGLSLLPRITAWDSPLNPVRP LPPVGGSPLLHGVEPNEQEATLPLGERVGHTLVLGTTRVGKTRLAEVYITQDIHRPSREVVIVFDPKGDADLLKRMYVEA RRAGREHEFYVFHLGWPEISARYNAIGRFGRISEVATRIAGQLSGEGNSAAFREFAWRFVNIIARALIELGRRPDYLQIQ RHVVNIDGLFIEYAQHFFARHDPQAWETIVDLEARLNEKNVPRHMIGREKRVVAIEQYLTAKRLFDPVMDGLRSAVRYDR TYFDKIVASLLPLLEKLTSGKTAQLLAPNYADLEDPRPIFDWLQVIRKRGIVYVGLDALSDAEVAAAVGNSMFADLVSVA GHIYKHGIDHGLPNSSSEGDKVPINLHADEFNELMGDEFIPLINKGGGAGIQVTAYTQTLSDIEARIGSRAKAGQVIGNF NTLQMLRVRETATAELLTNQLPKVNVQTRTLVSGATDTADPDARTDFTSSSQDRVTTTSVPLIEPAHIIALPKGQMFSFQ EGGQLWKVRMPLPKPASDDAMPADLQTLAARMRESYNTNAGSWWGSAGGAPTVNFDPEMPPPGRKSAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ORF SG68 | AAN62290.1 | conserved hypothetical protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 76 |
| ORF C65 | AAN62159.1 | conserved hypothetical protein | Not tested | PAGI-2(C) | Protein | 0.0 | 75 |
| traG | CAI36113.1 | putative TraG family conjugative protein | Not tested | PPHGI-1 | Protein | 0.0 | 69 |
| EXA47 | ABD94656.1 | TraG/TraD family protein | Not tested | ExoU island A | Protein | 0.0 | 67 |
| unnamed | ABR13375.1 | hypothetical protein | Not tested | PAGI-5 | Protein | 0.0 | 67 |
| RL047 | AAP84173.1 | conserved hypothetical protein | Not tested | PAPI-1 | Protein | 0.0 | 67 |
| YE3493 | YP_001007651.1 | TraG-family protein | Not tested | YAPI | Protein | 0.0 | 65 |
| YpsIP31758_3718 | YP_001402672.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 65 |
| api27 | CAF28501.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 65 |
| PMI2588 | YP_002152307.1 | plasmid transfer protein | Not tested | Not named | Protein | 0.0 | 63 |
| STY4562 | NP_458648.1 | hypothetical protein | Not tested | SPI-7 | Protein | 0.0 | 61 |
| t4260 | NP_807858.1 | hypothetical protein | Not tested | SPI-7 | Protein | 0.0 | 61 |
| Pmu_03190 | YP_005176218.1 | conjugal transfer protein TraD | Not tested | ICEPmu1 | Protein | 0.0 | 58 |
| traD | AAW83057.1 | TraD | Not tested | GGI | Protein | 9e-136 | 50 |
