Gene Information

Name : PPS_2122 (PPS_2122)
Accession : YP_004701563.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2386222 - 2386884 bp
Length : 663 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCTTGCTGTTGGTAGAAGACGACGCCGCGTTGGGGGAGGGGATTTGTGACGGCCTGCGCCGCGAGGGCTATACCCT
CGACTGGTTGCAGGATGGCGCCAGTGCCTTGCATGCCCTGTGCCACGAAGAGTTCGACCTGGCCATCCTCGACCTGGGCT
TGCCGCGCCTGGATGGCATCGAGTTACTGCGGCGCCTGCGTGCGGCCGAGAAGTGCTTGCCGGTGCTGGTGCTGACCGCC
CGCGACGCCACCGAGGACCGCATCGCCGGGCTGGACGCCGGCGCCGACGACTACCTGGTCAAACCCTTCGACCTCAACGA
ACTCAAGGCCCGCTTGCGGGCCTTGCTGCGGCGCAGTAGCGGCCGCGCCCGGGTGCTGATAGAGCATGCGGGGGTGAGAC
TGGACCCGGTCAGCCAGCAGGTGCACTACCTGGGCCAGCCGGTGGTACTCACGCCCAAGGAATACCTGCTGCTGCACGAA
CTGCTGGCTCAGCCGGGCAAGGTGTTCACCCGCGAACGCTTGACCCAGTTGCTGTATGGCTGGGATGAAGAGCCGGAGAG
CAACACCCTGGAAGTGAACATCTACCACCTGCGCAAGAAGCTGTTCAACGGCCTGATCCGCACCGTGCGCGGGATTGGCT
ACCTGGTGGAACGCAAGTCATGA

Protein sequence : 
MRLLLVEDDAALGEGICDGLRREGYTLDWLQDGASALHALCHEEFDLAILDLGLPRLDGIELLRRLRAAEKCLPVLVLTA
RDATEDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSSGRARVLIEHAGVRLDPVSQQVHYLGQPVVLTPKEYLLLHE
LLAQPGKVFTRERLTQLLYGWDEEPESNTLEVNIYHLRKKLFNGLIRTVRGIGYLVERKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-32 47
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-26 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-25 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_2122 YP_004701563.1 two component transcriptional regulator BAC0487 Protein 1e-31 48
PPS_2122 YP_004701563.1 two component transcriptional regulator NC_002516.2.879194.p Protein 5e-28 45
PPS_2122 YP_004701563.1 two component transcriptional regulator CP000647.1.gene1136. Protein 1e-21 42
PPS_2122 YP_004701563.1 two component transcriptional regulator BAC0197 Protein 1e-27 42
PPS_2122 YP_004701563.1 two component transcriptional regulator BAC0530 Protein 1e-21 42
PPS_2122 YP_004701563.1 two component transcriptional regulator CP001918.1.gene2526. Protein 7e-21 41
PPS_2122 YP_004701563.1 two component transcriptional regulator BAC0288 Protein 3e-24 41
PPS_2122 YP_004701563.1 two component transcriptional regulator BAC0308 Protein 2e-25 41
PPS_2122 YP_004701563.1 two component transcriptional regulator Y16952.3.orf35.gene. Protein 4e-25 41
PPS_2122 YP_004701563.1 two component transcriptional regulator U82965.2.orf14.gene. Protein 3e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_2122 YP_004701563.1 two component transcriptional regulator VFG0473 Protein 5e-34 48
PPS_2122 YP_004701563.1 two component transcriptional regulator VFG0596 Protein 8e-27 44