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Name : PPS_1447 (PPS_1447) Accession : YP_004700902.1 Strain : Pseudomonas putida S16 Genome accession: NC_015733 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1609052 - 1611037 bp Length : 1986 bp Strand : + Note : - DNA sequence : GTGCGTGAGTACCTGGTTAACCTGTCCAGGCGGAAAAAGCGTCTTGTGCAAGTGTGCGCCGACGTGGTGCTGATCTGGTT GGCGTTATGGTTGTCCTTTATCGTGCGCCTGGGCATCGATGAAATGTACAACCCGGTCATCAAGCACGCCTGGTTGTTCG TGGTTGCACCCGTGGTAGCCATTCCGCTGTTCATTCGCTTTGGCATGTACCGGGCGGTGATGCGCTACTTCGGCAATGAC GCCTTGGTGACCATCATCAAGGCCGTTACCCTTTCATCGCTTATTCTGGCTGTGGTTGTGTACTGGTACAGCAACCATCA GGTAATCGTGCCGCGCTCGATCATCTTCAACTATTGGTGGTTGAGCATGGTCATCATTGGTGGTTTACGCCTGATCATGC GCCAGTACTTCCTGGGCGACTGGTTTACTGGTGCCCATCAGATACCCTTTGCCAACCGCGATGATGGCCTGGTCAAGGTA GCCATCTATGGTGCAGGCACCGCCGGCAACCAGCTGCTGGCAGCGTTGCGCATGGGGCGGGCGATGCGCCCGGTGGCGTT TATCGATGACGACAGTGACCTTGCCAACCGGGTCATTTCCGGTTTGCAGGTGTACAAGCCCAAGCATCTGCCGCAGATGA TCAAGGAAACCGGCGCACAGGAAATCCTCCTCGCCCTACCTTCGGTATCGCGCGCCCGACGCAAGGAGATTCTTGCCTTG CTCGAACCGTACCCGTTGCACGTGCGCAGCGTGCCGGCCTTTGCCGACCTGGCAAGTGGCCGGGTCAAGGTGGACGACAT TCAAGATGTGGATATTGCCGATTTGCTTGGGCGTGACCCGGTACCCGCCAAGGAAGGGTTGCTCGAGCGCTGCATCCACA AGCAGACGGTGTTGGTCACCGGGGCCGGTGGCTCCATAGGTTCCGAACTTTGCCGTCAGATCATCGGGCTTGGGCCAACG ACATTGCTGCTGTTCGACCACAGCGAGTACAACCTTTACGCCATCCTCAGCGAGCTGGAGCAGCGCGTTGCGCGCGAGTC GCTGTCGGTGCGCCTGCTGCCGATACTGGGGTCGGTACGCAATCAGCAGCACCTGGCCGACGTGATGTCCACTTGGCGGG TAGCCACTGTGTATCACGCGGCAGCCTACAAACATGTGCCCATGGTTGAGCACAACATGGCCGAAGGCATTCTGAATAAT GTGTTCGGCACGTTGTGCACCGCACAGGCTGCCCTGCAATCAGGGGTCGCCAACTTCGTGCTTATCTCCACGGACAAAGC GGTGCGCCCAACCAACGTCATGGGTGGTACCAAACGTCTTTCCGAGTTGATTCTGCAAGCACTAAGCCGCGAGGCGGCAC CCGTCATGTACGGTGACAGCAGCAAGATCGCCCGGGTGAACAATACCCGCTTCACCATGGTGCGCTTTGGCAATGTGCTG GGCTCCTCTGGCTCAGTGATCCCGTTGTTCCACAAGCAGATCAAGGCTGGTGGCCCGATTACGGTTACCCACCCAAAGAT TACCCGCTATTTCATGACTATCCCCGAAGCCGCTCAGCTGGTGGTTCAGGCAGGGGCGATGGGGCAGGGCGGTGATGTAT TTGTTCTGGATATGGGGGAGCCGGTAAAAATTGTAGAGCTGGCCGAAAAAATGATTCATCTTTCGGGCCTCAGCGTCCGT AGCTCAGGCAACCCCAGCGGTGATATCGCTATTGAATTCACGGGGCTACGCCCAGGTGAAAAGCTTTTTGAAGAATTGTT GATTGGCGATGATGTTTCCCCGACCGTTCACCCGATGATCATGGTAGCGAATGAAGACTATGTAAGCTGGGACGTCTTGC GTGAGCGTATTACCGTGTTACTGAATGCAGTGGCAGTGGATGACTTTGGCCGTATCCGTCAACTGTTGCGTGAATTAGTG AACGGGTATGCACCAGAAGGGGAAATTGTCGACTGGATCTACCTACAGCAGCGGCAGGACCGTTGA Protein sequence : MREYLVNLSRRKKRLVQVCADVVLIWLALWLSFIVRLGIDEMYNPVIKHAWLFVVAPVVAIPLFIRFGMYRAVMRYFGND ALVTIIKAVTLSSLILAVVVYWYSNHQVIVPRSIIFNYWWLSMVIIGGLRLIMRQYFLGDWFTGAHQIPFANRDDGLVKV AIYGAGTAGNQLLAALRMGRAMRPVAFIDDDSDLANRVISGLQVYKPKHLPQMIKETGAQEILLALPSVSRARRKEILAL LEPYPLHVRSVPAFADLASGRVKVDDIQDVDIADLLGRDPVPAKEGLLERCIHKQTVLVTGAGGSIGSELCRQIIGLGPT TLLLFDHSEYNLYAILSELEQRVARESLSVRLLPILGSVRNQQHLADVMSTWRVATVYHAAAYKHVPMVEHNMAEGILNN VFGTLCTAQAALQSGVANFVLISTDKAVRPTNVMGGTKRLSELILQALSREAAPVMYGDSSKIARVNNTRFTMVRFGNVL GSSGSVIPLFHKQIKAGGPITVTHPKITRYFMTIPEAAQLVVQAGAMGQGGDVFVLDMGEPVKIVELAEKMIHLSGLSVR SSGNPSGDIAIEFTGLRPGEKLFEELLIGDDVSPTVHPMIMVANEDYVSWDVLRERITVLLNAVAVDDFGRIRQLLRELV NGYAPEGEIVDWIYLQQRQDR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-82 | 42 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 3e-81 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PPS_1447 | YP_004700902.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 4e-124 | 46 |
| PPS_1447 | YP_004700902.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 9e-80 | 44 |
