Gene Information

Name : PPS_0137 (PPS_0137)
Accession : YP_004699606.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Virulence
Product : reverse transcriptase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3344
EC number : -
Position : 151149 - 152402 bp
Length : 1254 bp
Strand : +
Note : -

DNA sequence :
ATGAGCGGTGTGAGTTCGAACAAACCTTACAACATAGCGAAGCGCGTGATATGGGAGGCCTATCAGCAGGTCAGAACCAA
CCGGGGAGCTGCTGGAATCGACGATGAGACCATTGCCGATTTTGAGCGGAACCTGCCGAAGAATCTTTACAAGCTATGGA
ATCGAATGTCGTCGGGGTCTTATTTCCCGCCGCCGGTCAAGGCTGTTGAGATACCGAAGGCATCGGGGGGTATACGCAGG
TTGGGAGTGCCGACGGTCAGCGACCGTATCGCACAAACTGTAGTCAAACTCCTCATCGAGCCAAAGCTGGATGCGCTTTT
CCATCCGGACTCATATGGATACCGACCAGGACGTTCAGCCAAACAGGCCATAGCGATCACACGCGAACGCTGCTGGCGAT
ACGACTGGGTGGTGGAGTTTGATATCAAGGCGGCTTTCGATCACATTGATCATGAACTGCTGATGAAAGCGGTGCGAACC
CATATCAAAGAGGATTGGATACTGCTGTACATCGAACGATGGCTGGTTGCTCCATTCGAGGCAGCAGATGGCGTTCGCAT
TCAACGCGAACGTGGCACCCCGCAAGGCGGCGTGATCAGTCCCATGTTGATGAATCTGTTCATGCATTACGCCTTTGACG
CATGGATGCAACGAAATAGCCCAAACTGTCCTTTTGCCCGGTATGCCGATGATGCGGTAGTGCATTGTCGTAGCCAGAGG
CAAGCAGAACACGTGATGCGTTCAATCGCTTCACGTCTAGCGGTTTGTGGCCTCACGATGCATCCCGAGAAATCGAAAAT
CGTGTACTGCAAGGACAGCAATCGACGCGCAGGGTATCCGCATGTGAGCTTTACCTTCCTTGGTTTCACTTTTAGACCTA
GGAAGGCAATCGGCCAGCAGAACAAGCTTTTCACCAGCTTCCTTCCGGGAGTCAGTGCGCAAGCGTTGAAGCGGATGCGG
CGAGCAGTGCGCGAGTGGCGGGTCAGCCGCCAAACTCATGTGACGCTGGCTGCTGTGGCTCGGCTTTACAACCCAGTGAT
ACAAGGTTGGTGGCAGTACTATGGCGCGTTCTATCGGACGGCCATGCTTGGTATCTTTCGACATATCGATAGCGCGCTCA
AGCGTTGGGCCGGTCGTAAGTACAAAATACTTCACGGGCGCAAGCGGCGTATATCTAAATGGTTGGACACGGTGCATAAG
GCTGCCCCTCGACTGTTTTATCACTGGCAAGTAACCGAGCAACAGGTTGGATAA

Protein sequence :
MSGVSSNKPYNIAKRVIWEAYQQVRTNRGAAGIDDETIADFERNLPKNLYKLWNRMSSGSYFPPPVKAVEIPKASGGIRR
LGVPTVSDRIAQTVVKLLIEPKLDALFHPDSYGYRPGRSAKQAIAITRERCWRYDWVVEFDIKAAFDHIDHELLMKAVRT
HIKEDWILLYIERWLVAPFEAADGVRIQRERGTPQGGVISPMLMNLFMHYAFDAWMQRNSPNCPFARYADDAVVHCRSQR
QAEHVMRSIASRLAVCGLTMHPEKSKIVYCKDSNRRAGYPHVSFTFLGFTFRPRKAIGQQNKLFTSFLPGVSAQALKRMR
RAVREWRVSRQTHVTLAAVARLYNPVIQGWWQYYGAFYRTAMLGIFRHIDSALKRWAGRKYKILHGRKRRISKWLDTVHK
AAPRLFYHWQVTEQQVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13526.1 reverse transcriptase Not tested PAGI-7 Protein 8e-178 85
unnamed CAD33771.1 putative reverse transcriptase Not tested PAI I 536 Protein 7e-87 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_0137 YP_004699606.1 reverse transcriptase VFG1512 Protein 4e-87 44