Gene Information

Name : PPS_1093 (PPS_1093)
Accession : YP_004700548.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Virulence
Product : general secretion pathway protein F
Function : -
COG functional category : N : Cell motility
COG ID : COG1459
EC number : -
Position : 1225796 - 1226998 bp
Length : 1203 bp
Strand : +
Note : -

DNA sequence : 
ATGCCGACCTATCGCTACCAGGCCGTCGACCTCGCCGGCAAGACCCACAAGGCCAGCTTGCAGGCCGACAGCGAACGTCA
TGCCCGCCAGTTGTTGCGTGAGCAGGGCCTGTTCGCCCGCCGCTTGCAGCGTCACGAAGCCGGCACCCGGCAACCCCGGC
GCCAGCGCCTGAGCCGCGCCCAGCTGTGCGAACTGACTCGTCAGCTGGCCACCCTGACCGGTGCCGGTATCCCTCTGGTC
GACGCCCTGGCTACCCTGGAACGGCAACTGCGCCAGCCCGCCCTGCACAGTGTGCTGGTGGCCTTGTGCGGCTCGTTGGC
CGAAGGCCTGGGCCTGGCTCGCAGCCTGGCACGTCAGGGGGCACCGTTTACCGGCCTGTACTGCGCGCTGGTCGAGGCCG
GCGAGCGGTCCGGCCGCCTGGCCCAGGTGCTGACCCGCCTCGCCGACCATCTGGAGCAGGTTCAACGACAGCAGCACAAG
GCACGTACCGCGCTGATTTACCCCGCCGTGTTGATGGGGGTGTCGCTTGCCGTGGTGGTAGGCCTGATGACCTTCGTCGT
ACCCAAGCTCACCGAACAGTTCGCCCATGCCGGGCAAAGCCTGCCGCTCATTACCTCGTTACTGATCGGCCTGAGCCAAG
GGTTGGTGCAGGCCGGGCCCTGGCTTTTGGCGCTGGCCCTGTTGCTTGGAGCGCTCGGCGGCTGGTTGCTGCGCAAGCCG
CACTGGTGCCTGCGCCGTGACCAGCTGCTGCTACGCCTGCCACATATAAGCAACCTGCTGCAGGTGCTGGAAAGCGCGCG
CCTGGCACGCAGCCTGGCAATCCTCAGCGGCAGTGGCGTGGCCCTGCTCGAAGCCCTGCAAGTGGCCACCGAAACCGTCG
GCAACCGGCGTATCCGCCTGGCCATGGAGCAGGTGCGCCAGCAAGTTCAGGGCGGCACCAGCCTGCATCGCGCGCTGGAT
GCCAGCCAGCAGTTCCCGCCGTTGCTGGTGAACATGGTCGGCAGCGGCGAGGCCAGCGGCACCCTGGCCGACATGCTCGA
GCGCGTGGCCGATGACCAGGAGCGCGGTTTCGCCCGCCAGGTCGATACCGCCATGGCGCTGTTCGAACCCCTGATGATCC
TGGTGATGGGCGCCGTGGTGCTGTTCATCGTGCTGGCGGTGCTGTTGCCGATCATGCAACTCAACCAGGGCCTGCAACTT
TGA

Protein sequence : 
MPTYRYQAVDLAGKTHKASLQADSERHARQLLREQGLFARRLQRHEAGTRQPRRQRLSRAQLCELTRQLATLTGAGIPLV
DALATLERQLRQPALHSVLVALCGSLAEGLGLARSLARQGAPFTGLYCALVEAGERSGRLAQVLTRLADHLEQVQRQQHK
ARTALIYPAVLMGVSLAVVVGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLVQAGPWLLALALLLGALGGWLLRKP
HWCLRRDQLLLRLPHISNLLQVLESARLARSLAILSGSGVALLEALQVATETVGNRRIRLAMEQVRQQVQGGTSLHRALD
ASQQFPPLLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGAVVLFIVLAVLLPIMQLNQGLQL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspF YP_854405.1 type II secretion protein GspF Not tested PAI I APEC-O1 Protein 8e-54 42
gspF CAE85232.1 GspF, hypothetical type II secretion protein Not tested PAI V 536 Protein 5e-53 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_1093 YP_004700548.1 general secretion pathway protein F VFG0181 Protein 8e-58 43
PPS_1093 YP_004700548.1 general secretion pathway protein F VFG2049 Protein 1e-51 41