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Name : PPS_1092 (PPS_1092) Accession : YP_004700547.1 Strain : Pseudomonas putida S16 Genome accession: NC_015733 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1224344 - 1225792 bp Length : 1449 bp Strand : + Note : - DNA sequence : ATGCTGCCCTATCGCCAGGCACGGCAGAGCGGGGTGGCCATGGCCCCTGCGGAGGAGGGCTGGCAGCTATGGTTGCGGCA CGACGCCGACAGCGCCCAATTGCAGGAGCTGCTGCGCGTGCACGGCCAGCCAAGCCTGCTCGAATACCTGGAGCCTGCAC TGTTCGACGAACGCCTCGGCCAGCTGTACCAGGCCGGCGATGCTGCCACCGAGGCGCTGATCGAGGGCATCGGCGACCAG GTCGACCTGGACAGCCTGATGAGCGAAATGCCGCGCATCGAGGACCTGCTGGAAAGCGACGATGAAGCCCCGGTGATCCG CCTGATCAACGGCCTGTTCGGCCAGGCCCTGCGCCTGCGCGCTTCGGACATTCATATAGAAACCTTCGAGCAGAGCCTCG TGGTGCGCCTGCGGGTCGATGGCCACCTGCGCGAAGTGTTGCGCCCACCGCGTGCGCTGTCGGCCATGCTGGTGTCGCGG ATCAAGGTCATGGCCCGTCTGGACATCGCCGAAAAGCGCCAGCCCCAGGATGGCCGTATCACCCTGCGTGCGGCGGGGCG CGAAGTGGATGTGCGGGTCTCGACACTGCCCGGCATCCACGGCGAACGGGTGGTGATGCGCGTGCTCGACAAGCAGGCCA GCCTGCTGGCGCTGGGCAACCTGGGCATGCCGGCGGCGGTGTTGCAAGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGC ATAGTGCTGTCCACGGGGCCGACCGGTTCGGGCAAGACCACGACCCTGTATGCCAGCCTCAACAGCCTCAACGACGGCAG CCGCAATATCCTCACTGTCGAGGACCCGGTGGAATACGCTATCGCCGGCATCGGCCAGACTGCCATCAACCCGCGTGCCG GGCTGACCTTTGCCAGCGGCCTGCGCGCCATCCTGCGCCAGGACCCGGACGTGATCATGCTCGGCGAAATCCGTGACCAG GAGACCGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGTCACCTGGTGTTGTCCACGCTGCACACCAACAGTGCGGTGGG CGCGGTGACCCGCCTGCGCGACATGGGCATCGAACCGTTCCTGATTGCCTCGTGCCTGCGCGGCGTACTGGCCCAGCGTT TGGTGCGGCGCCTGTGCAGTTGCGCCGTGGCGCACCCGCTGCAGCCGGCGGAACGCGACCTGTGGCCCGAGCTGGCAGCG CTGGGCAGCAGCTACCATGCGGTGGGCTGCGAGCAGTGCCAGGGCAGCGGGTATGTCGGGCGCCTGGGCCTGTATGAATT CATCGAGCTGGATGCCGGGCTGATCGGCCTGTTGTACGACGGCGCCAGTGAGCTGGCCATGCAGGACTACCTGGCCGAGC GCCGGCAGAGTCTGGTGGCGATGGCCAGTGACTGCCTGGCCCGTGGCGAGACCAGCCTGGCCGAAGTACTGCGCGTGGTG CAGGGCTGA Protein sequence : MLPYRQARQSGVAMAPAEEGWQLWLRHDADSAQLQELLRVHGQPSLLEYLEPALFDERLGQLYQAGDAATEALIEGIGDQ VDLDSLMSEMPRIEDLLESDDEAPVIRLINGLFGQALRLRASDIHIETFEQSLVVRLRVDGHLREVLRPPRALSAMLVSR IKVMARLDIAEKRQPQDGRITLRAAGREVDVRVSTLPGIHGERVVMRVLDKQASLLALGNLGMPAAVLQGLRSCLARPNG IVLSTGPTGSGKTTTLYASLNSLNDGSRNILTVEDPVEYAIAGIGQTAINPRAGLTFASGLRAILRQDPDVIMLGEIRDQ ETAQIAVQASLTGHLVLSTLHTNSAVGAVTRLRDMGIEPFLIASCLRGVLAQRLVRRLCSCAVAHPLQPAERDLWPELAA LGSSYHAVGCEQCQGSGYVGRLGLYEFIELDAGLIGLLYDGASELAMQDYLAERRQSLVAMASDCLARGETSLAEVLRVV QG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 8e-106 | 57 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-106 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PPS_1092 | YP_004700547.1 | type II secretion system protein E | VFG2048 | Protein | 4e-105 | 56 |
| PPS_1092 | YP_004700547.1 | type II secretion system protein E | VFG0182 | Protein | 9e-104 | 55 |
| PPS_1092 | YP_004700547.1 | type II secretion system protein E | VFG1876 | Protein | 6e-109 | 51 |
| PPS_1092 | YP_004700547.1 | type II secretion system protein E | VFG2426 | Protein | 1e-65 | 48 |
| PPS_1092 | YP_004700547.1 | type II secretion system protein E | VFG1880 | Protein | 8e-68 | 45 |
| PPS_1092 | YP_004700547.1 | type II secretion system protein E | VFG0112 | Protein | 7e-71 | 41 |
