Gene Information

Name : Spica_2628 (Spica_2628)
Accession : YP_004699234.1
Strain : Treponema caldaria DSM 7334
Genome accession: NC_015732
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 2978852 - 2980156 bp
Length : 1305 bp
Strand : -
Note : -

DNA sequence : 
ATGGCTGACATAAACATTGCAACACTACTTCTATTAGGGCTTTTTATCTTTCTCATGATTATACGACTCCCCATTACTTT
TTCCCTCATCTTTTCATCTATCGTAACTGCTTTGTATCTGAAAATCCCATTGATGGCAGTGGTCCAACAGATGGTGCAGG
GTGTACGGTCCTTCAGTTTGCTGGCAATTCCCTTTTTCATTATTGCCGGTGAAATGATGGGCCAAGGGGGTATCTCCCGG
CGGCTTATTCTCTTTTCCAACCTGCTTGTCGGCCGCATTCGGGGAGGACTTGCTCAGGTGAACTGTCTTGCTAGTATGTT
CTTCGGTGGTATTTCTGGCTCTGCAGTAGCCGATGTCTCTTCTATCGGTACCATTCTCATCCCCATGATGAAAGAAAAGG
GCTATGATGATGATTTTTCTGTGGGTATTACGGTTACCAGTGCATGTCAAGGAGTCATTATTCCGCCAAGCCATAATATG
ATCATTTATTCCCTTGCCGCAGGCGGTGTTTCAGTTGGCCGACTTTTCTTAGGTGGTTTTATACCAGGAGTACTACTGGG
GATCGGTCTTATGGTGGTAAGCTATGTTTTTGCTATTAAGCGAAACTACCCAAAAGAGAAGAAATACACCCTTAAAGAAT
CCCTGCAGATTACCAAAGACGCTGTGCTTGGCTTAATGACGGCAGTTATCATTATCGGTGGGGTCATCTCAGGTGTTTTT
ACTGCGACTGAATCTGCAGCGGTAGCCGTTGTATATGCCTTTATTATAACCTTTTTTGTATACCGAGAAATACCTCTTAA
AGCGTTTCCACAAATACTGTACAACTCTCTTAAAACGCTTGCTATGGTTATGTCTCTTATTGCAGCTGCCAGTGCATTCG
GATGGCTGATGGCATATCTCAGAATTCCCGCAAAAGCAACAGAAGCGCTCCTTTCGATAACCCATAATAAGATATTGTTA
TTACTGCTGATCAATATACTGCTGCTCTTGCTGGGTATGATTATGGACATGGCCCCGCTCATTCTTATAACAACCCCAAT
ATTGTATCCTGTAGTTGTCAATTCACTGGGGATGTCTCCGGTACATTTTGGAATAATGCTTATTCTAAACCTTGCAATCG
GTCTTACTACGCCGCCGGTGGGCTCTGCCCTTTTTGTAGGATGTGCGGTGGGGAAAATCCGTATCGAACAGGTGGTAAAA
ACCATGTTACCCATGTGGCTGGTGATGTTTACCGTGCTTATGTTGATCACCTTTATTCCGGAACTAACTCTGTGGATTCC
AGATCTGCTCATGCCCCAAAAATAG

Protein sequence : 
MADINIATLLLLGLFIFLMIIRLPITFSLIFSSIVTALYLKIPLMAVVQQMVQGVRSFSLLAIPFFIIAGEMMGQGGISR
RLILFSNLLVGRIRGGLAQVNCLASMFFGGISGSAVADVSSIGTILIPMMKEKGYDDDFSVGITVTSACQGVIIPPSHNM
IIYSLAAGGVSVGRLFLGGFIPGVLLGIGLMVVSYVFAIKRNYPKEKKYTLKESLQITKDAVLGLMTAVIIIGGVISGVF
TATESAAVAVVYAFIITFFVYREIPLKAFPQILYNSLKTLAMVMSLIAAASAFGWLMAYLRIPAKATEALLSITHNKILL
LLLINILLLLLGMIMDMAPLILITTPILYPVVVNSLGMSPVHFGIMLILNLAIGLTTPPVGSALFVGCAVGKIRIEQVVK
TMLPMWLVMFTVLMLITFIPELTLWIPDLLMPQK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 1e-56 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 1e-56 41
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 1e-56 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spica_2628 YP_004699234.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 6e-57 41