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Name : Spica_2015 (Spica_2015) Accession : YP_004698651.1 Strain : Treponema caldaria DSM 7334 Genome accession: NC_015732 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit clpA Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2260884 - 2263325 bp Length : 2442 bp Strand : - Note : - DNA sequence : ATGCAAATCAGCCGCCATGTGCAGGCTATAATCAATGCCGCTTATAATGAAGCCAAGGTTCGGAATCACGAATATTTAAC CCCCGAACATGTGCTTTATGCCGCCCTGGCCTTTGAGGAGGTTCAGCAGGTTCTGCTCGCCTGCGGTGCGGATCTGAACC AGATAAAAAGCGGTATGGAAAACTATTTTGAGCAGAAAGTTCCGGTGGTCCAGAACATGGAACCTACCCAGACGGTGGGG TTTCAGAGCGTACTTGAACGGGCGGTACTCCAAAGCCAATCGGCCCAAAAAAAAGAACTCGATGTGGCTGATATTCTCGT GTCCCTCTATGATGAGGAGCGTAATTACTGTGCCTATTATCTGCGTAAAGCCGGTGTAAAACGGATTGACCTTCTTGAGG TGCTTTCCCATGGGATCCGTTTTGGGGATGAATCGGAAGAGGAGGGGGATAATGGGGACCCAGCCGCTTCAGGCTCATGG AAAGAAAAAAATGAAGAGAACGGAGAAGATGCAGAGGCTGATAGCGGTATCGAGGCTGAACCGCGCATGCGGCCGGCCCG TAAGAGTGCCCTAGAGCGGTTTACTACTGACCTGACTGCCCTGGCTCGGGAGGGCAAGCTCGAGCCTGTGATTGGCCGGG AACACGAACTGGATCGAACGGTCCAGGTCCTGTGCCGCCGCCTGAAAAATAATCCCATCCATGTGGGGGATTCCGGTGTG GGGAAAACCGCCATTACCGAGGGGCTTGCCCAGCGAATTGTGGCAGGCAATGTGCCGCCGACCTTGAGGGGATTTTCAAT CTACGCTTTGGACATGGGTGCCCTTGTGGCAGGAACCAAGTACCGGGGTGATTTTGAGGAACGAATTAAGAAGGTGGTGG ATGAAATCCTGAAAAAAGAAAAGGCCATCCTTTTTATTGATGAAATTCACACCCTGGTGGGTGCCGGTGCGACTTCAGGG GGCTCCCTGGATGCCTCGAATTTACTGAAACCTGCGCTGACCTCAGGCAAGATTCGCTGTATTGGCTCCACAACCCACGA AGAATACACCAAGTATTTCGATAAGGACCGGGCGCTTTCGCGCCGGTTCCAGAAAATTGATATAAACGAGCCCAGTGAGG CCGATGCGATTGCGATTCTTAAGGGGCTCCGGCACAAATATGAAGAATTCCACCGCGTTCGCTATACCGATGCGGCCCTC GAAACGGCGGTGCGCCTCTCTGCCCAGTTTATCACCGAGCGGCGTCTTCCCGATAAGGCCATCGATGTGATCGATGAGGC CGGTGCCTTTGCCCGGATCCAGGCCTTTAAGGCTCGGGAAAATCAGGATGCAGAGACAGCGGGGGAAGTCCGGGTAGACA CCAATGTCCCCACCACCGCAGAATCTCAGGCAGAGGCCCAGACAGATACAGAGGCAGCCTTTGCCCCTGAAAACCTGGAT GCTCTGCCTATTATAGAGATTGATGTTCCTCAGATCGAAACTGTGGTAGCCCGGATTGCCCGGATTCCCGAACGCACGGT TGGAGAAAATGAAAAGGATAAGCTCCGGTTCCTCGAAAGCCGCCTCAAGGAGCGAATCTTCGGCCAGGATGCGGCGGTCG AAGCCGTCGTTCGGGCGGTAAAACGATCCCGGGCTGGATTCCGTGCTCCCAATAAGCCCATTGCCAATTTCCTCTTTGTT GGTCCTACGGGGGTAGGTAAAACTGAGCTCGCCCGGAGTCTGGCGGATGTGTTGGGCATTGCCATGCATCGCTTTGATAT GAGTGAATATCAGGAAAAGCATACCGTGAGCAGGCTTATTGGGTCTCCTCCCGGGTATGTGGGATATGAAGAGGGCGGGC TCTTAACCGATGCGGTTCGCAAGCAGCCCCATGCGGTGGTTCTGCTGGACGAAATAGAAAAGGCCCATCCGGATATCTTC AACATACTTTTACAGATTATGGACTATGCTACATTGACCGACAACAACGGCAGAAAAGCCGACTTCCGCAATGTGGTGCT TATCATGACCAGCAATGCCGGTGCCCGGGATATCGGCAAAAGCCTCATTGGTTTTGGGGAACGGATCCTCGATGAGGCGG TGGTGGATGGGGCGGTAGAGCGGATCTTTACCCCCGAATTCCGAAACCGCCTGGATGCGGTGGTCCGCTTTGGCCACCTG AACCAGGACATTGTGGCATCCATAGTCCGCAAGGAATTGGACGCCTTCAGGATGCAGTTGGCTGAAAAGCAGGTTGTGCT GGAAGTGACCGAGACCTGTATCATGCAGCTTGCTAAGGATGGATACAGTCGTGAATTCGGCGCACGCAATGTGAGCAGAC TAATAGAAGATAAAATTAAGAGCTTCTTTGTAGATGAGGTCCTCTTTGGCCGGCTTGCCTCTGGCGGAGTGGCCCGCGCA GACTGGTCCAACGGTGCATACCGTATCGAGGTGGTTTCCTAA Protein sequence : MQISRHVQAIINAAYNEAKVRNHEYLTPEHVLYAALAFEEVQQVLLACGADLNQIKSGMENYFEQKVPVVQNMEPTQTVG FQSVLERAVLQSQSAQKKELDVADILVSLYDEERNYCAYYLRKAGVKRIDLLEVLSHGIRFGDESEEEGDNGDPAASGSW KEKNEENGEDAEADSGIEAEPRMRPARKSALERFTTDLTALAREGKLEPVIGREHELDRTVQVLCRRLKNNPIHVGDSGV GKTAITEGLAQRIVAGNVPPTLRGFSIYALDMGALVAGTKYRGDFEERIKKVVDEILKKEKAILFIDEIHTLVGAGATSG GSLDASNLLKPALTSGKIRCIGSTTHEEYTKYFDKDRALSRRFQKIDINEPSEADAIAILKGLRHKYEEFHRVRYTDAAL ETAVRLSAQFITERRLPDKAIDVIDEAGAFARIQAFKARENQDAETAGEVRVDTNVPTTAESQAEAQTDTEAAFAPENLD ALPIIEIDVPQIETVVARIARIPERTVGENEKDKLRFLESRLKERIFGQDAAVEAVVRAVKRSRAGFRAPNKPIANFLFV GPTGVGKTELARSLADVLGIAMHRFDMSEYQEKHTVSRLIGSPPGYVGYEEGGLLTDAVRKQPHAVVLLDEIEKAHPDIF NILLQIMDYATLTDNNGRKADFRNVVLIMTSNAGARDIGKSLIGFGERILDEAVVDGAVERIFTPEFRNRLDAVVRFGHL NQDIVASIVRKELDAFRMQLAEKQVVLEVTETCIMQLAKDGYSREFGARNVSRLIEDKIKSFFVDEVLFGRLASGGVARA DWSNGAYRIEVVS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 5e-125 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Spica_2015 | YP_004698651.1 | ATP-dependent Clp protease, ATP-binding subunit clpA | VFG0079 | Protein | 1e-131 | 46 |
| Spica_2015 | YP_004698651.1 | ATP-dependent Clp protease, ATP-binding subunit clpA | VFG0080 | Protein | 5e-115 | 42 |
