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Name : Spica_1447 (Spica_1447) Accession : YP_004698100.1 Strain : Treponema caldaria DSM 7334 Genome accession: NC_015732 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1633612 - 1635093 bp Length : 1482 bp Strand : + Note : - DNA sequence : ATGACATCCTTTAAATCAGCCCGTTTGTATATCATTGGCGCAGGTTTTGCCGGACAGACCCTGGCACGGGAAATTAAAGC CAAGGGAATTTTTGGTGAGGTTGTAGCATTTCTCGATGATGACCCGGCCAAAATTGGCCACAGTATCGAAGGGATACCCG TTTTAGGCCCCATTAAGGATGTAGCCCGCCTCTTGCGAATGAATCCCGCTGATGAGGCTATCATCGCCATTCCCAGCGCA AGCCGGGAATACTTACGGGAACTCTATAACATTTTAAAAAAGGCTGGCTTTGAAAAGATCCGCATATTGCCGGGAATTTC CCAGATCATCGAAGGGGATGCCCACCTTATCCAGACCCGGTCCATCGATCCACAGGACCTTCTAGGGAGAACCCCAGTAG CTATAGGCTTGAAAGAGAGCCTTACCTATCTCAGGGGCAAACGGGTCCTCGTGACAGGAGCAGGAGGTTCTATCGGTAGT GAATTGTGCCGTCAGCTTCTATCCGGCGGCGCTCAACGTTTATATCTCTTCGGCCATGGAGAAAATTCTATCTATCAAAT TGATCGTGAGCTCAGACTGCTCCAGGAAGAAGGGGTTGGTGAAAAGGCCACCATAGTACCAATCATCGGTGATCTAAAGG ATGAAGCCTATGTGAATTACATCATCGGGAAACTCAAGGTTGATGTTATTTTCCATGCCGCCGCTTATAAACATGTCCCC ATGATGGAAGAAAATCCTGTAGCAGCAATTGAAAATAATGTATTCGGTACGGAAAACCTGGTAAAGGCTGCAGGTCACTA CAAAGTTAAACGTTTTGTACTCATTTCGACCGATAAAGCGGTTGATCCTGTCTCAGTATATGGCGCTTCCAAAATGCTCT GTGAACAATTGGTACTCTCCGCTTCCCAGGAAGGGGGAGCCCATTTTATGGTGGTTCGTTTTGGTAATGTACTGGGTTCC CGAGGCTCTATCATGCCCCTCTTCCAGAAACAGATCGAAAAAGGCGGCCCTGTTACCGTTACCCACCCTGAGGCTCGGCG CTGGTTTATGACCATACCTGAAGCATGTTCCCTCGTACTGAAGGCAGGAGGGGTTGGCGAAAACGGTAAACTGTACCTCC TTGATATGGGAGAACCAATAAAGATCCGGGAATTGGCGGAGCAAATGATACGATTCTATGGATTTGAACCGGATCGGGAA ATAAAAATTGAGTATATCGGACTGAGGCCAGGGGAACGGCTTGATGAACGACTCTGGAGTGAAAACGAAATTCCTGTGGA AACTGAGTATCCCCGGATTCGTCGTGTAGAACGAAAGGAAGCGCCCCTGCTCGACCTGCCGAAACTTCTGGAAAGTATCA GACCAATCTGCCGTTTCGATCCAGCAAAAGCAAATCTGTATCGCGACAAGGTTCTTTTAAGACGGCTCTTGCACGACTTT ATTCCGACGGTTATCATTCCCGAACATGAACAAAACAATTGA Protein sequence : MTSFKSARLYIIGAGFAGQTLAREIKAKGIFGEVVAFLDDDPAKIGHSIEGIPVLGPIKDVARLLRMNPADEAIIAIPSA SREYLRELYNILKKAGFEKIRILPGISQIIEGDAHLIQTRSIDPQDLLGRTPVAIGLKESLTYLRGKRVLVTGAGGSIGS ELCRQLLSGGAQRLYLFGHGENSIYQIDRELRLLQEEGVGEKATIVPIIGDLKDEAYVNYIIGKLKVDVIFHAAAYKHVP MMEENPVAAIENNVFGTENLVKAAGHYKVKRFVLISTDKAVDPVSVYGASKMLCEQLVLSASQEGGAHFMVVRFGNVLGS RGSIMPLFQKQIEKGGPVTVTHPEARRWFMTIPEACSLVLKAGGVGENGKLYLLDMGEPIKIRELAEQMIRFYGFEPDRE IKIEYIGLRPGERLDERLWSENEIPVETEYPRIRRVERKEAPLLDLPKLLESIRPICRFDPAKANLYRDKVLLRRLLHDF IPTVIIPEHEQNN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-67 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Spica_1447 | YP_004698100.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 1e-72 | 46 |
| Spica_1447 | YP_004698100.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 2e-66 | 42 |
