Gene Information

Name : Nit79A3_0288 (Nit79A3_0288)
Accession : YP_004693584.1
Strain : Nitrosomonas sp. Is79A3
Genome accession: NC_015731
Putative virulence/resistance : Unknown
Product : Integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 316356 - 317264 bp
Length : 909 bp
Strand : +
Note : KEGG: afe:Lferr_1426 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core

DNA sequence : 
CTGAGGTCGTTCATCGACCGGTATCGTGACACCCACGGGGTCGAGCCGATCTGCAAGGTATTGCAGGTCGCCCCGTCAGG
GTATCGGCGTCACGCGGCCGAGCGGCGCAATCCGGCATTGCGTTGCACTCGTGCCCAACGCGATGAGGTTTTGATGCCAG
AAATTCAGCGTGTGTGGCAGGCTAACCTGCAGGTGTATGGTGCCGACAAGGTATGGCGGCAACTTAAGCGCGAAGGAATG
CAGGTAGCTCGCTGCACTGTTGAACGGCTCATGAAACGGTTGGGGCTGGAAGGTGTGCGGCGCGGCAAGGTTGTGCGAAC
CACGGTTCCGGACAAGGCGCTGCCGTGCCCGCTGGATCGCGTAAACCGGCAATTCAAGGCGGATCGCCCAAACCAGTTAT
GGGTGTCGGATTTCACCTATGTTTCCACCTGGCAGGGCTGGCTATATGTCGCGTTCGTCATCGACGTGTTTGCCCGGTGC
ATCGTGGGTTGGCGGGTCAGTTCCAGCATGCACACGGACTTCGTACTGGATGCGCTGGAGCAGGCTTTATACGCCCGGCA
ACCGGAGCTGGGTGCCTTGATTCACCACAGCGACCGGGGTTCCCAGTATGTCTCTATCCGTTATACGGAGCGGCTTGCCG
AGGCTGGAATAGAACCGTCGGTTGGCAGTAAAGGAGATAGCTACGATAACGCACTAGCCGAAACGATCAACGGGCTTTAC
AAAGCTGAATTGATTCACAAGCAGGGGCCATGGAAAAACAGGGAATCCGTTGAATTGGCGACGTTGAACTGGGTGTTCTG
GTTCAATCACCAGCGTTTGCTTGGACCCATCGGCTATATACCGCCGGCGGAAGCTGAGGCACAATACTACCGGCAGTTAG
CCAACTTGGATTCTGCCAAAGTTACTTAA

Protein sequence : 
MRSFIDRYRDTHGVEPICKVLQVAPSGYRRHAAERRNPALRCTRAQRDEVLMPEIQRVWQANLQVYGADKVWRQLKREGM
QVARCTVERLMKRLGLEGVRRGKVVRTTVPDKALPCPLDRVNRQFKADRPNQLWVSDFTYVSTWQGWLYVAFVIDVFARC
IVGWRVSSSMHTDFVLDALEQALYARQPELGALIHHSDRGSQYVSIRYTERLAEAGIEPSVGSKGDSYDNALAETINGLY
KAELIHKQGPWKNRESVELATLNWVFWFNHQRLLGPIGYIPPAEAEAQYYRQLANLDSAKVT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 2e-58 69
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 1e-57 68
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 4e-66 68
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 3e-78 65
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 4e-78 65
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 4e-74 65
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 5e-77 65
Z1221 NP_286756.1 transposase Not tested TAI Protein 3e-77 65
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-77 64
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-77 64
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-77 64
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-77 64
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-77 63
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 3e-74 63
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-76 63
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 8e-74 63
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 8e-74 63
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 8e-74 63
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-76 63
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 7e-74 62
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-53 62
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-50 46
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 6e-34 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nit79A3_0288 YP_004693584.1 Integrase catalytic subunit VFG1602 Protein 4e-74 62