Gene Information

Name : Nit79A3_0267 (Nit79A3_0267)
Accession : YP_004693571.1
Strain : Nitrosomonas sp. Is79A3
Genome accession: NC_015731
Putative virulence/resistance : Unknown
Product : Integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 304815 - 305693 bp
Length : 879 bp
Strand : -
Note : PFAM: Integrase, catalytic core; KEGG: rso:RSp0548 ISRSO8-transposase orfB protein

DNA sequence :
GTGAAGTACGCCTGGATTGATAAGCAACGGGAGTTTTCTCTCGCCGAGATGTGTACGATATTAGATGTCAGCGTGAGCGG
ATACCGGTCGTGGAAGCGTGGTAGCAAACCGGATCGCAAACGCCTCACCGACACTCAAATGCTGACGCTGATCCAATCTA
TTCATGCCGAACTCAAGGGGATCTACGGTAGTCCGAGAATGGTCAGAGAATTGCGTGACCGTGGGTTTCCAGCTTCCAAG
AAGCGGGTTGAACGTCTAATGCGAGAGAACGGCATTCGTGCAAGGCACAAGCGGCGCTACAAGATAACGACGGACTCCAG
GCACAATCTGCCGATTGCACCGAATCTGCTGGATCGGAATTTCAGTCCAGCCGCGCCTAATCAGGTCTGGACATCCGATA
TCACTTACCTATGGACAGATGAGGGCTGGCTATATCTGGCTATCGTGCTTGATCTGTTTAACCGTGAGGTGGTTGGCTGG
TCGCTGAAACCGCGCATGACTGCAGACATCGTTACAGATGCACTAACGATGGCATGGTTTCGCAAGAAACCTGCAGCAGG
ATTGATGCACCACTCAGATCGGGGTAGCCAATATGCCAGCAAAGAATTTCAGAGAAGGCTCAAGAAATACGGCATGATCT
GCTCAATGAACCGTAAAGGTAATTGTTGGGATAATGCCCCAACCGAAAGTTGGTTCAATAGCTTCAAGAACGAGCGAGTA
CATGGACTGCGTTATGAAACACGCGCAGAGATGGCTGCCATGAGCTTCGAGTACATCGAGGTACTTTACAACCGGAAACG
GCAGCACTCAACGTTAGGCTATAAATCGCCAATGAGGTTTCTAAATGACTGGCTAATCCTCAACAGAAGAAAAAGCTGA

Protein sequence :
MKYAWIDKQREFSLAEMCTILDVSVSGYRSWKRGSKPDRKRLTDTQMLTLIQSIHAELKGIYGSPRMVRELRDRGFPASK
KRVERLMRENGIRARHKRRYKITTDSRHNLPIAPNLLDRNFSPAAPNQVWTSDITYLWTDEGWLYLAIVLDLFNREVVGW
SLKPRMTADIVTDALTMAWFRKKPAAGLMHHSDRGSQYASKEFQRRLKKYGMICSMNRKGNCWDNAPTESWFNSFKNERV
HGLRYETRAEMAAMSFEYIEVLYNRKRQHSTLGYKSPMRFLNDWLILNRRKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 7e-51 45
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 7e-51 45
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 7e-51 45
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 3e-53 45
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 5e-53 45
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 5e-53 45
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 3e-53 45
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 3e-48 44
unnamed AAF09030.1 unknown Not tested SHI-O Protein 4e-53 44
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 4e-53 44
unnamed AAF09022.1 unknown Not tested SHI-O Protein 3e-53 44
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 3e-51 44
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 4e-53 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-50 44
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 4e-51 44
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 4e-51 44
tnpB CAB61574.1 transposase B Not tested HPI Protein 1e-40 42
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 7e-41 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nit79A3_0267 YP_004693571.1 Integrase catalytic subunit VFG1706 Protein 1e-53 45
Nit79A3_0267 YP_004693571.1 Integrase catalytic subunit VFG1631 Protein 2e-48 44