Gene Information

Name : Nit79A3_2615 (Nit79A3_2615)
Accession : YP_004695781.1
Strain : Nitrosomonas sp. Is79A3
Genome accession: NC_015731
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 2799887 - 2800561 bp
Length : 675 bp
Strand : +
Note : KEGG: nit:NAL212_1452 DNA repair protein RadC; TIGRFAM: DNA repair, RadC-like; PFAM: DNA repair, RadC-like

DNA sequence : 
ATGGCGATTCCAAATTGGCCTATATCTGAGCGACCACGAGAAAAGCTATTGCAAAAAGGTGTCACTGCCCTTTCCGATAC
AGAACTGCTAGCCATATTTCTTCGTACTGGCATAACAGGGAAAAGTGCTGTAGATCTCGCAAGAGAATTACTTTTACATT
TCGGCAACCTAACTAATATATTTGCAGCCAATCAGATTAGTTTTTGTCAATTACCCGGTATGGGAATTGCAAAATATACA
CAACTACAGGCTGTGTTAGAAATGGCCCGCCGTGCATTAAGTGAAGAGCTGAAGAGCGGAAATGCAATGAATTCACCGGA
GTTGGTTCGAGATTTTCTACGCCTGAGTCTGGCAAACAAACAACACGAAGTTTTTCTTGGTATTTTTCTTGATGCTAAAA
ATCATACCATTGCTACTGAAGAACTATTTAGCGGCACATTGACACAAGCCAGCGTTTATCCTCGGGAAGTCATCAAACGG
GCTTTGTATCACAATGCAGCAGCCATCATTTTTGCGCACAATCACCCTTCTGGCGTGGCCGAGCCCAGTCATGCGGACAA
AGTGCTTACCCAATCCCTGAAACAAGCATTGGCTATGATTGATGTCAAAGTATTGGATCACTTTATTGTTGGCAACGGCA
CTACCCTGTCATTTGCCGAACATAATTTAATTTGA

Protein sequence : 
MAIPNWPISERPREKLLQKGVTALSDTELLAIFLRTGITGKSAVDLARELLLHFGNLTNIFAANQISFCQLPGMGIAKYT
QLQAVLEMARRALSEELKSGNAMNSPELVRDFLRLSLANKQHEVFLGIFLDAKNHTIATEELFSGTLTQASVYPREVIKR
ALYHNAAAIIFAHNHPSGVAEPSHADKVLTQSLKQALAMIDVKVLDHFIVGNGTTLSFAEHNLI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 8e-21 47
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 8e-21 47
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 5e-21 47
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 5e-21 47
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 2e-21 47
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 8e-22 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nit79A3_2615 YP_004695781.1 DNA repair protein RadC VFG1678 Protein 4e-22 47
Nit79A3_2615 YP_004695781.1 DNA repair protein RadC VFG1617 Protein 8e-22 47