Gene Information

Name : Nit79A3_1833 (Nit79A3_1833)
Accession : YP_004695037.1
Strain : Nitrosomonas sp. Is79A3
Genome accession: NC_015731
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1963314 - 1964525 bp
Length : 1212 bp
Strand : -
Note : PFAM: Integrase, catalytic core, phage; KEGG: net:Neut_1755 phage integrase

DNA sequence :
ATGAAGCTGACAGATCCGGAAATTAAAGCAGCAAAACCTAAAGAGAAGCCTTACTCACTTCCTGATGGTCATGGGCTTGT
TTTACTGGTTCAGCCTTCGGGTGCTAAATGGTGGCGATATCGGTATCGTTTCAATGGCACGGCTAAAATGCTTTCTATGG
GTGTTTACCCTGATGTGACATTAAAAGAAGCACGTAACCAGCAAGCGCGCTTCAAAGAATTACTGGCACAGAGCATTGAT
CCTTCGCTGCACCGCCAAGAACAAAAACAGCAGCAAGCCATAGCGACAGAAAATAGCTTTGAATCAATAGCGCGTCTTTG
GTGGAATCAATGGAGCGCAGCACGCAATCAACGCCACGCAGATTATGTTATTCGTAGACTGGAAGCTGATATTTTTCCTG
TTATCGGTAGAAAGCCTGTCACTGAGTTATCAGCACCTATGCTTCTAATGGCTATCAAGAAGATTGAAGCCAGGGGTGCA
CTAGATATTGCCAAGCGGGCATTAACCACTTGCAATCAGATCATGCGTTATGCCGTGGCACATGGACTGGCAGAACGCAA
TCCAGCAGCAGATATAAAGCCTTCTGATGTACTTAAACCCACCACGAAAACCAACTATGCAAGGCTGGATCAAAAAGAAT
TACCCGAACTACTCCGCAAGATCGATGCTTACGATGGGCAACCACTCACAAAGCTGGCTTTGCAACTGATGGCTTTAACG
TTTGTCCGTACCAGTGAATTAATCGGTGCCAAGTGGGATGAAATAGAACTGGATAATAAGCAGTGGCGTATACCGGCTGA
GTGCATGAAGATGAAAACCCCGCATATCGTGCCCTTATCAAACCAAGCTATCGCGGTATTGGGGAAAATCAAAGAGCTGG
CAGCCGATCAAATCTTACTGTTTCCCAGTGAACGTAGGGACGGTAATTCAATGAGCAATAACACCATTCTTTACGCACTC
TACCGGCTTGGGTATCACTCACGCATGACAGGTCACGGCTTCAGGGGCATAGCTTCAACGATTCTTCATGAGCGCGGTTA
TAGTCATGAGCATATTGAATTACAATTGGCACATGCGAAACGTGATCAAGTATCAGCGAGTTATAACCACGCTCTATATC
TGGAACCACGCGCAAGAATGATGCAGGATTGGGCTGATTATCTGGAAGCAATAAGGGCAGGGGCAGCGATATTGCCGTTT
AGGGCTGCATAA

Protein sequence :
MKLTDPEIKAAKPKEKPYSLPDGHGLVLLVQPSGAKWWRYRYRFNGTAKMLSMGVYPDVTLKEARNQQARFKELLAQSID
PSLHRQEQKQQQAIATENSFESIARLWWNQWSAARNQRHADYVIRRLEADIFPVIGRKPVTELSAPMLLMAIKKIEARGA
LDIAKRALTTCNQIMRYAVAHGLAERNPAADIKPSDVLKPTTKTNYARLDQKELPELLRKIDAYDGQPLTKLALQLMALT
FVRTSELIGAKWDEIELDNKQWRIPAECMKMKTPHIVPLSNQAIAVLGKIKELAADQILLFPSERRDGNSMSNNTILYAL
YRLGYHSRMTGHGFRGIASTILHERGYSHEHIELQLAHAKRDQVSASYNHALYLEPRARMMQDWADYLEAIRAGAAILPF
RAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAC39282.1 integrase Not tested LPA Protein 3e-75 44
int AAD44730.1 Int Not tested SHI-2 Protein 3e-75 44
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-75 44
int ACU09430.1 integrase Not tested LEE Protein 2e-72 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 3e-72 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-72 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 3e-72 43
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-74 43
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-74 43
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-74 43
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-63 42
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 2e-71 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-63 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 1e-63 41
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 5e-64 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-63 41
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 5e-64 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 5e-64 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 5e-64 41
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 3e-59 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 3e-63 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-63 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-63 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 7e-63 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 4e-63 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-63 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 4e-63 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-63 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 4e-63 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-63 41
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-65 41
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-65 41
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-66 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nit79A3_1833 YP_004695037.1 integrase VFG0783 Protein 1e-72 43
Nit79A3_1833 YP_004695037.1 integrase VFG0598 Protein 7e-75 43
Nit79A3_1833 YP_004695037.1 integrase VFG0626 Protein 2e-64 41
Nit79A3_1833 YP_004695037.1 integrase VFG1693 Protein 2e-64 41