Gene Information

Name : RLO149_c004980 (RLO149_c004980)
Accession : YP_004689489.1
Strain : Roseobacter litoralis Och 149
Genome accession: NC_015730
Putative virulence/resistance : Resistance
Product : tetracycline resistance protein, class C
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2814
EC number : -
Position : 527199 - 528404 bp
Length : 1206 bp
Strand : -
Note : -

DNA sequence : 
GTGAAACCCGCCGTCGTTTTCATTCTCATCACAATGATGATTGATGCGATGGGCATCGGGCTGATCATCCCCGTTATGCC
CGATCTGTTCCAAGAGGTTGGCGCGGGTGATCTTGGCACGGCAGCCCTCTGGGGCGGGATATTGGCCACTGCATTTGCGG
TCATGCAGTTCTTCTTTGGGCCTGTGATCGGCGGGCTGTCTGATCGCTTTGGACGCAGGCCTGTACTGCTGGTGTCACTG
GTTGTGATGATGCTGGATTACCTTGTCATGGCGCTGGCCGGCAGCATCTGGCTGTTGCTGATCGGGCGCATGATCGGCGG
GGTGACGGCTGCAACGCAGGCAACGGCGAACGCCTATATGGCGGACATTTCTGCCCCCGAAGACCGGGCCGCAAATTTCG
GCCTGATCGGTGCCGCCTTTGGCGTCGGCTTTGTGCTTGGCCCGTTGATTGGCGGCCTGCTGGCGGAATTCGGGACCCGC
GCCCCGTTTTATGCCGCCGCCGCCTGCGCCGGGCTGAATGCAATATTCGGCTATTTCGTGCTCAAGGAGACACTGCCCAC
CAGCAAACGGCGCCCTTTCGAGTGGCGACGCGCCAACCCTTTCGGCAGTTTTCGCCACCTCAGCAAGCTGCACGCGCTGG
GGCCTTTCCTGATCGTGTTTTTTCTCTATCAGGTGGCATTCGCCGTTTACCCCGCGATTTGGTCTTTTTTCGGGAAGGAG
CGTTTTGGCTGGGAACCTGCGACCATCGGGCTGAGCCTTGCGCTGTTCGGCATCATGATGGCCATCGTGCAGGGCGGTCT
GATCCGGCCCGTCATGCGTCTGCTGGGCGCGCGTGGCACGGTCGTGTACGGCCATATCTTTGATATCTGTGCGTTTTTGG
CCCTCGCCTTTGTCACCAGCGGCACCGTCGCCCTCATCCTGACGCCGCTTGCCGCCCTCGCCGCGGTGATCACACCCGCC
CTGCAAGGTATCATGTCCAAATCTGTCGGACCCGACGCGCAAGGCGAATTACAAGGTGCACTTACTTCGCTCAGCGCGCT
GGCAATGATCCTGTCACCACTGGTCATGACCGGCACTTTTGCAGCCTTCACCGGTCCGGATGCACCAATATACGCACCCG
GCGCACCCTTCATTCTATCGGCTGGACTGATCGCAATCGGTCTGGCCATTTTTGTGATGCGCGGACGAAGCGCGTCGTTT
TCATGA

Protein sequence : 
MKPAVVFILITMMIDAMGIGLIIPVMPDLFQEVGAGDLGTAALWGGILATAFAVMQFFFGPVIGGLSDRFGRRPVLLVSL
VVMMLDYLVMALAGSIWLLLIGRMIGGVTAATQATANAYMADISAPEDRAANFGLIGAAFGVGFVLGPLIGGLLAEFGTR
APFYAAAACAGLNAIFGYFVLKETLPTSKRRPFEWRRANPFGSFRHLSKLHALGPFLIVFFLYQVAFAVYPAIWSFFGKE
RFGWEPATIGLSLALFGIMMAIVQGGLIRPVMRLLGARGTVVYGHIFDICAFLALAFVTSGTVALILTPLAALAAVITPA
LQGIMSKSVGPDAQGELQGALTSLSALAMILSPLVMTGTFAAFTGPDAPIYAPGAPFILSAGLIAIGLAIFVMRGRSASF
S

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 2e-45 44
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 2e-45 44
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 2e-45 44
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 3e-45 44
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 4e-45 44
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 6e-45 44
tetA(G) AGK07104.1 TetA(G) Not tested SGI1 Protein 5e-39 41
tet(G) AAK02051.1 tetracycline resistance protein Not tested SGI1 Protein 5e-39 41
tetA(G) ABZ01843.1 TetA(G) Not tested SGI2 Protein 5e-39 41
tetA(G) AGK06974.1 TetA(G) Not tested SGI1 Protein 5e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RLO149_c004980 YP_004689489.1 tetracycline resistance protein, class C X75761.gene.p01 Protein 3e-45 44
RLO149_c004980 YP_004689489.1 tetracycline resistance protein, class C NC_011586.7045189.p0 Protein 8e-41 44
RLO149_c004980 YP_004689489.1 tetracycline resistance protein, class C NC_010410.6002597.p0 Protein 3e-45 44
RLO149_c004980 YP_004689489.1 tetracycline resistance protein, class C CP001485.1.gene2821. Protein 3e-45 44
RLO149_c004980 YP_004689489.1 tetracycline resistance protein, class C AF534183.gene.p01 Protein 2e-45 44
RLO149_c004980 YP_004689489.1 tetracycline resistance protein, class C Y19114.gene.p01 Protein 9e-47 43
RLO149_c004980 YP_004689489.1 tetracycline resistance protein, class C AY264780.2.gene3.p01 Protein 2e-43 43
RLO149_c004980 YP_004689489.1 tetracycline resistance protein, class C AF090987.gene.p01 Protein 2e-41 43
RLO149_c004980 YP_004689489.1 tetracycline resistance protein, class C NC_009085.4918440.p0 Protein 1e-35 42