Gene Information

Name : RLO149_c040230 (RLO149_c040230)
Accession : YP_004692884.1
Strain : Roseobacter litoralis Och 149
Genome accession: NC_015730
Putative virulence/resistance : Virulence
Product : two component signal transduction response regulator receiver protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4073410 - 4074081 bp
Length : 672 bp
Strand : -
Note : -

DNA sequence : 
ATGAACATTCTATTGATTGAAGACGAGGCGCGCGTTGCTGACTTTGTTCGCCGTGGTCTGGCAGCGGAAGGATGGTCAGT
CGATCATGCCGCCAACGGAGAAGATGGTCTGGAGCTTGCCGCCCAGAACAACTACGACGTCGTGTTGCTGGACCTGATGT
TACCGGGCATTCAGGGACAGGGTGTCTGCCGTAAATTGCGTGCTCGCAAATCCAAGACACCAATCATGATGCTGACGGCG
CTTGATGGGTCCGAAGAAAAAGTCGAGGGCCTGAAAATTGGCGCGGATGATTACTTGCCCAAACCTTTTGATTTTGACGA
ACTGGTCGCACGTATCGAGGCGTTGCACCGACGCGCCACTGGCTATACCGCCGACGTGAGTGACACGATTATCACCAACG
GCGCCATTACGTTTGACCGTGCTTCCCTTGAGGTCAATGTGGAGAAAAAGCCGATTGAGCTCACAAAGAAAGAGCGTGAT
CTCTTACAGCTTCTCCTGACAAGCAATGGGCGGGTTTTATCCAGAGAGCGCATTCTGAACACGGTCTGGGGCCTGAATGC
AGACCCTTTGACCAATGTGGTGGATGTGTATGTCGGTCGGCTGCGCCGAAAGCTCGGTCAGGAAGGTCAGCGCATCGTGA
CGCTGCGCAATGTGGGATACCGAATGGCATAG

Protein sequence : 
MNILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLPGIQGQGVCRKLRARKSKTPIMMLTA
LDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRRATGYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERD
LLQLLLTSNGRVLSRERILNTVWGLNADPLTNVVDVYVGRLRRKLGQEGQRIVTLRNVGYRMA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-35 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-34 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RLO149_c040230 YP_004692884.1 two component signal transduction response regulator receiver protein NC_010079.5776364.p0 Protein 3e-40 47
RLO149_c040230 YP_004692884.1 two component signal transduction response regulator receiver protein NC_002952.2859858.p0 Protein 3e-40 47
RLO149_c040230 YP_004692884.1 two component signal transduction response regulator receiver protein NC_007622.3794948.p0 Protein 3e-40 47
RLO149_c040230 YP_004692884.1 two component signal transduction response regulator receiver protein NC_003923.1003417.p0 Protein 3e-40 47
RLO149_c040230 YP_004692884.1 two component signal transduction response regulator receiver protein NC_013450.8614146.p0 Protein 3e-40 47
RLO149_c040230 YP_004692884.1 two component signal transduction response regulator receiver protein NC_002951.3238224.p0 Protein 3e-40 47
RLO149_c040230 YP_004692884.1 two component signal transduction response regulator receiver protein NC_007793.3914065.p0 Protein 3e-40 47
RLO149_c040230 YP_004692884.1 two component signal transduction response regulator receiver protein NC_002758.1121390.p0 Protein 3e-40 47
RLO149_c040230 YP_004692884.1 two component signal transduction response regulator receiver protein BAC0125 Protein 1e-35 44
RLO149_c040230 YP_004692884.1 two component signal transduction response regulator receiver protein BAC0308 Protein 2e-32 44
RLO149_c040230 YP_004692884.1 two component signal transduction response regulator receiver protein AE015929.1.gene1106. Protein 5e-34 43
RLO149_c040230 YP_004692884.1 two component signal transduction response regulator receiver protein HE999704.1.gene1528. Protein 5e-30 41
RLO149_c040230 YP_004692884.1 two component signal transduction response regulator receiver protein BAC0638 Protein 4e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RLO149_c040230 YP_004692884.1 two component signal transduction response regulator receiver protein VFG0596 Protein 2e-35 43
RLO149_c040230 YP_004692884.1 two component signal transduction response regulator receiver protein VFG1390 Protein 4e-39 42
RLO149_c040230 YP_004692884.1 two component signal transduction response regulator receiver protein VFG1389 Protein 2e-29 41