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Name : clpB (RLO149_c038250) Accession : YP_004692693.1 Strain : Roseobacter litoralis Och 149 Genome accession: NC_015730 Putative virulence/resistance : Virulence Product : chaperone protein ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 3871476 - 3874094 bp Length : 2619 bp Strand : - Note : - DNA sequence : ATGGACTTGAACAAGTTCACGGAACGGTCGCGCGGGTTTATCCAGGCGGCACAGACGATTGCGGCACGCGAAAGCCATCA GAGATTGGCAGCCGAACACTTATTGAAAGCATTGATGGACGATGATCAGGGGCTGGCCAGCAATCTGATCTCAGCTGCGG GTGGGCAACCAGCGCAGGTCCTGGATGCTGTTGATCTCGCACTGGGTAAAATGCCCAAGGTGACCGGTGATGCTGCACAG GTTTATGTGGATGGCACCACGACCAAGGTTCTCGCCGAGGCCGAGCAACTGGCCAAAAAGGCCGGTGACAGTTTTGTCCC TGTCGAGCGCATTTTGATGGCGCTGTGCATGGTCAAATCAGGGGCTAAAACGGCCTTGGATGCGGGGCAGGTGACCGCGC AGGCGTTGAACGGTGCAATTAACGATGTGCGCAAGGGGCGCACAGCGGATACCGCAACTGCCGAAGAAGGCTATGATGCG TTGAAGAAATACGCGATGGACCTGACAGATCGGGCCGAGGCGGGCAAGATCGACCCGATCATCGGTCGGGACGAGGAAAT CCGCCGCACCATGCAGGTTCTGAGCCGCCGGACCAAGAACAATCCGGTGCTGATCGGGGAGCCGGGCGTTGGTAAAACCG CGATTGCCGAAGGGCTGGCCCTGCGGATCGTAAACGGCGATGTGCCTGAATCCCTGCGCAACAAGAAGCTGCTCGCGCTG GATATGGGTGCATTGATCGCGGGAGCAAAGTTTCGCGGTGAATTTGAAGAACGCCTCAAAGCGGTGCTGACCGAAGTCAC GGAAGCTGCGGGCGAGATCATTCTTTTCATCGATGAGATGCACACGCTTGTCGGCGCGGGTAAGGCGGATGGCGCAATGG ATGCGGCCAACCTGATCAAACCTGCCCTTGCGCGTGGTGAGTTGCATTGTGTCGGGGCAACCACGCTTGATGAGTATCGC AAATATGTTGAAAAAGACGCAGCCCTTGCGCGTCGGTTCCAGCCCATTCTGGTGCAGGAGCCAACGGTCGAGGACACGGT GTCGATCCTGCGTGGTATCAAAGAGAAATACGAGCTTCACCATGGTGTGCGTATCTCGGATTCGTCGCTGGTCGCGGCGG CGACGCTGAGCCACCGCTACATCACCGACCGGTTCTTGCCTGATAAGGCAATCGACCTCGTGGACGAAGCGGCATCGCGT TTGCGCATGGAAGTGGACAGCAAACCCGAAGAACTGGACGCCATCGACCGCCAGATCCTGCAGATGCAGATCGAGGCCGA AGCGCTCCGGCGTGAGGACGATGCGGCAAGCTTGGATCGCCTTGAGACGCTGGAAAAGGAACTGTCCGAATTGCAGGAGC GCAGCGATGCGATGACTGCGAAATGGCAGGCCGAGCGGGACAAGTTGGCGGGCGCGCGTGATCTCAAGGAACAACTTGAT CATGCCCGCGCGGAACTGGAAATCGCCAAGCGCGAGGGGAACCTCGGTAAAGCGGGCGAATTATCTTATGGAGTGATCCC GCAACTGGAAAAGCAGCTGGAGGCTGCCGAGGGGCGGGACGACGGCGACGTCATGGTCGAAGAAGCCGTGCGCCCCGAGC AGATCGCCAGTGTGGTTGAGCGCTGGACCGGTATCCCGGCGGGCAAAATGCTGGAAGGTGAACGCGATAAACTGCTGCGC ATGGAGGATCAGCTGCATGGCCGGGTGATCGGGCAGGAACCCGCGGTGCGCGCAATTTCCAACGCGGTGCGCCGTGCGCG CGCGGGTCTGAATGATGAGAACCGGCCTTTGGGCTCGTTCCTGTTCCTTGGGCCAACCGGTGTTGGTAAAACCGAACTGA CCAAAGCGGTCGCTGAGTTTCTGTTTGATGACGACAATGCGATGGTGCGCATCGACATGTCAGAGTTCATGGAAAAACAC GCGGTGTCGCGCCTGATCGGTGCCCCTCCCGGCTATGTCGGGTACGATGAAGGCGGCGTTTTGACCGAAGCTGTGCGTCG CAGACCCTATCAGGTTGTCCTGTTCGATGAGGTCGAAAAGGCCCACCCGGATGTTTTCAACGTCCTGTTGCAGGTGCTGG ATGATGGGGTTCTGACCGACGGTCAGGGTCGCACGGTAGATTTCAAACAGACGTTGATCGTGTTGACCTCAAACCTCGGG GCGCAGGCGCTTAGCCAGCTGCCTGATGGGGCCGATGCATCGGGTGCAAAGCGGGATGTGATGGATGCGGTCCGCGCCCA TTTCCGGCCGGAGTTCTTGAACCGTCTGGATGAGACGATCATCTTTGACCGACTTGCACGGACCGATATGGATGGGATCG TCGACATTCAGATGGCGCGTCTGTTGAAACGGCTGGCCGGTCGCAAGATCGCACTGGAACTGGATGACGCGGCACGCATG TGGCTCGCGGACGAAGGCTACGACCCGGTCTTCGGGGCGCGCCCGCTGAAACGTGTGATCCAGCGCGCCTTGCAGGATCC GCTTGCCGAGATGATCTTGGCAGGGGACGTCAAAGACGGCGATGTCATTCAGGTCAGTGTCGGCAGCGAAGGTCTGTTAA TCGGCGACAGGATCGCGGCGACCAACAGGCCCAAGCCGGATGAAGCGGTCGTACACTAA Protein sequence : MDLNKFTERSRGFIQAAQTIAARESHQRLAAEHLLKALMDDDQGLASNLISAAGGQPAQVLDAVDLALGKMPKVTGDAAQ VYVDGTTTKVLAEAEQLAKKAGDSFVPVERILMALCMVKSGAKTALDAGQVTAQALNGAINDVRKGRTADTATAEEGYDA LKKYAMDLTDRAEAGKIDPIIGRDEEIRRTMQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLRNKKLLAL DMGALIAGAKFRGEFEERLKAVLTEVTEAAGEIILFIDEMHTLVGAGKADGAMDAANLIKPALARGELHCVGATTLDEYR KYVEKDAALARRFQPILVQEPTVEDTVSILRGIKEKYELHHGVRISDSSLVAAATLSHRYITDRFLPDKAIDLVDEAASR LRMEVDSKPEELDAIDRQILQMQIEAEALRREDDAASLDRLETLEKELSELQERSDAMTAKWQAERDKLAGARDLKEQLD HARAELEIAKREGNLGKAGELSYGVIPQLEKQLEAAEGRDDGDVMVEEAVRPEQIASVVERWTGIPAGKMLEGERDKLLR MEDQLHGRVIGQEPAVRAISNAVRRARAGLNDENRPLGSFLFLGPTGVGKTELTKAVAEFLFDDDNAMVRIDMSEFMEKH AVSRLIGAPPGYVGYDEGGVLTEAVRRRPYQVVLFDEVEKAHPDVFNVLLQVLDDGVLTDGQGRTVDFKQTLIVLTSNLG AQALSQLPDGADASGAKRDVMDAVRAHFRPEFLNRLDETIIFDRLARTDMDGIVDIQMARLLKRLAGRKIALELDDAARM WLADEGYDPVFGARPLKRVIQRALQDPLAEMILAGDVKDGDVIQVSVGSEGLLIGDRIAATNRPKPDEAVVH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 2e-166 | 44 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-104 | 44 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 2e-100 | 42 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 1e-100 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_004692693.1 | chaperone protein ClpB | VFG2076 | Protein | 7e-121 | 44 |
| clpB | YP_004692693.1 | chaperone protein ClpB | VFG2084 | Protein | 3e-104 | 42 |
