Gene Information

Name : RLO149_c037410 (RLO149_c037410)
Accession : YP_004692618.1
Strain : Roseobacter litoralis Och 149
Genome accession: NC_015730
Putative virulence/resistance : Virulence
Product : metal ion ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 3791164 - 3791979 bp
Length : 816 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCACCCCGGCAACACTTGCAACACGAGACGGCCGGGCTGCGACCCCGGCCGCGCTTGCGCCCGAAATTCCCCTTGC
CGTGCGAGGGTTGACCGTATCCTACGGCGAGAAACCCGCGGTCTTTTCGGTTGACGCCGATTTCCCCGCACAAGCCATGT
CCGCCATCATCGGCCCAAACGGCGCGGGGAAATCCACGTTACTCAAGGCCGCTCTTGGCGTCATTCCCCGCCTGTCAGGC
GAGGTGTCGATCTTTGGCACACCGATCGAAAAGGCCCGCCACAGGATCGCCTATGTGCCCCAACGCGCCAGTGTAGACTG
GGACTTTCCCACCACGGTAATCGACGTTGTGCAGATGGGCCTTTATCGCAAGGTCGGACTCCTTGGCCGCTTATCTGGCA
AAATGACCGCGCAAGCGCGCGACTGCCTTGACCGCGTTGGCATGGCCGATTTCGCGGATCGCCAGATCGGCCAACTGTCC
GGCGGCCAGCAACAGCGTGTGTTTCTTGCGCGCGCGTTGGCGCAGGATGCCGATCTCTACTTGCTGGACGAGCCGTTTGC
GGGCGTCGATGCCGCCACTGAACGCGCAATCATCGACGTGCTGAAGCTGCTCAAGGCCGAAGGCAAGGCGGTGGTCGCGG
TGCATCATGATCTGTCTACCGTGGCGGATTACTTCGACCACGTGTTTCTGATCAACGTGCGCCGCATCGCCGAAGGGCCG
GTTGCGACGACCTTCACCCCGGACAACCTCAGCGCCACCTATGGCGGGCGTCTGGGTGCTACGCATATGGCGGAACTGGC
AGGGGTCGCGTCGTGA

Protein sequence : 
MRTPATLATRDGRAATPAALAPEIPLAVRGLTVSYGEKPAVFSVDADFPAQAMSAIIGPNGAGKSTLLKAALGVIPRLSG
EVSIFGTPIEKARHRIAYVPQRASVDWDFPTTVIDVVQMGLYRKVGLLGRLSGKMTAQARDCLDRVGMADFADRQIGQLS
GGQQQRVFLARALAQDADLYLLDEPFAGVDAATERAIIDVLKLLKAEGKAVVAVHHDLSTVADYFDHVFLINVRRIAEGP
VATTFTPDNLSATYGGRLGATHMAELAGVAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 3e-40 47
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 2e-40 47
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 3e-37 43
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-37 43
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 2e-36 43
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 2e-36 43
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-37 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RLO149_c037410 YP_004692618.1 metal ion ABC transporter ATP-binding protein BAC0400 Protein 5e-59 59
RLO149_c037410 YP_004692618.1 metal ion ABC transporter ATP-binding protein BAC0440 Protein 5e-39 45
RLO149_c037410 YP_004692618.1 metal ion ABC transporter ATP-binding protein BAC0350 Protein 1e-37 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RLO149_c037410 YP_004692618.1 metal ion ABC transporter ATP-binding protein VFG0526 Protein 1e-37 43