Gene Information

Name : dctM2 (RLO149_c002520)
Accession : YP_004689246.1
Strain : Roseobacter litoralis Och 149
Genome accession: NC_015730
Putative virulence/resistance : Virulence
Product : TRAP C4-dicarboxylate transport system permease DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 250455 - 251732 bp
Length : 1278 bp
Strand : -
Note : -

DNA sequence : 
ATGGGCTTGCTTATTCTCGTCACCGTTTTCGTCATCGGGCTGGTCGTGGGCATCCCCGTGGCCATCACTCTCGGCCTGAG
TTCCCTCTGCTATCTGCTGGTGACGGGCATTCCCGTGGTCGTCATGCCGCAGAAAATGTATGCGGGCATGGATGTTTTCG
TATTGCTCAGCATCCCCGGCTTTATTCTCGCAGGCAACCTGATGAACCGGGGCGGTATTACGGAACGGATCATCCGCTTT
GCAAATGCGCTGGTCGGTTGGATCAGAGGGGGCCTTGGCCTCACAAACGTGGGCGCGTCGATGCTGTTCGGCGGCATCAC
CGGCACGGCAGTTGCCGATGCGGCATCCATCGGCGGCGTCATGATACCGGGCATGAAAAAGGCCGGATACCCTGCCGATT
TTTCAGCCGCCATCACCGCCGCCTCCTCCACCGTCGGGCCGATCATTCCGCCAAGCGTGCCGATGATCATTGTCGGAGCC
TTGTCCGGTATCTCGGTCGGAAAGATGTTTCTTGCCGGGGCGATACCGGGCATTTTGCTGGGTATGGCGATGATGATCAC
CACCTATGTGATTGCGCGCCGCCGGAATTTTCCCAAACAGGAATGGCAGGGCGTGGGCGAAATCGGGCGGTCCTTCGCGG
GCGCGTTCTGGGCGCTCGCGATGACCGCTTTGATCCTTTACGGTCTACTGAGTGGCGTGGCGACACCCACGGAAACGGCG
ATCATCGCGAGTGTCTATGCCATGTTCATCGGACTTGTCGTTTACCGCGAACTTCCGTTCCGTGAAATTCCCAAGATCAT
CGTTGACAGCGCCGTTGCCGCATCGGGGATTCTGGTTCTGGTCGGGTTTGCGAATGTGTTCGGCTGGATCCTCGTCTCTG
AGCGTATTCCACAGGCCATCGCCGCCGCTGTCCTGTCGTTCACGGAAAACAAATTCATCATCATCCTGATCATCAACATC
CTGCTGCTGATTGTCGGCATGTTCATGGAAACGATTGCGGCCCTGATCATCCTCTTTGTCCCACTTCTGACGCTTGCCAC
CTCCGTGGGGATTGACCCGCTGCATTTTGCGACCTTTGCGGTGCTGAACCTGATGATCGGCCTGACAACCCCGCCCCTTG
GCGTGTGCCTGTTTGTCTGCGCGGGGATCGCGCGATTGCCCTTGACCCCCGTCATTATCGCGATCCTGCCGTTTATCGCG
ACAAACATCATCGTTCTGTTGATGGTGTCCTACTTCCCCCCGCTGGCGACCTGGTTGCCCTCTGTCCTTATCCCGTAA

Protein sequence : 
MGLLILVTVFVIGLVVGIPVAITLGLSSLCYLLVTGIPVVVMPQKMYAGMDVFVLLSIPGFILAGNLMNRGGITERIIRF
ANALVGWIRGGLGLTNVGASMLFGGITGTAVADAASIGGVMIPGMKKAGYPADFSAAITAASSTVGPIIPPSVPMIIVGA
LSGISVGKMFLAGAIPGILLGMAMMITTYVIARRRNFPKQEWQGVGEIGRSFAGAFWALAMTALILYGLLSGVATPTETA
IIASVYAMFIGLVVYRELPFREIPKIIVDSAVAASGILVLVGFANVFGWILVSERIPQAIAAAVLSFTENKFIIILIINI
LLLIVGMFMETIAALIILFVPLLTLATSVGIDPLHFATFAVLNLMIGLTTPPLGVCLFVCAGIARLPLTPVIIAILPFIA
TNIIVLLMVSYFPPLATWLPSVLIP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 5e-57 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 4e-57 41
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 5e-57 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
dctM2 YP_004689246.1 TRAP C4-dicarboxylate transport system permease DctM VFG1110 Protein 2e-57 41