Gene Information

Name : insF6 (CNE_BB1p12780)
Accession : YP_004688715.1
Strain :
Genome accession: NC_015727
Putative virulence/resistance : Unknown
Product : transposase InsF for insertion sequence IS3
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1340540 - 1341424 bp
Length : 885 bp
Strand : +
Note : -

DNA sequence : 
GTGAGCTACCGGGTGGTAGCCCACTTGCAACAGGAGGCCGTATCGGTCAGTAACGCCTGCCGGGTATTGCAGGTGAGCCG
CTCGGGCTACTATGCGCACCGCCGCGCCAAGCCAAGCATGAAGACTCTGCAGGAGCAGACCCACGTCAAAGCGGCGTTCG
CTGCGAGCGGCGCGAGCTACGGCAGCCGGCGTGTCATGCATGCGGTGCGGGAACAAGGGGTGCGCCTTGGCCGCTACCGG
ATTCGTAGGCTGATGCGCGAAGCGGGCTTGCGTGCGACCTGGAAGCGTAAGTTCGTGTCGACGACTGACAGCAAACACAC
TCTGCCAGTGGCAGAGAACGTGCTGAACCGGCAATTTGACGTGGCCGAGCCGAATCGGGCCTGGACTTCGGACATCACCT
ATGTCCGCACGGCCCAAGGCTGGCTGTATCTGGCGGTCGTGCTGGACTTGTACTCGCGCAAGGTCGTGGGCTGGTCGATG
GCGCCGACCATGCCGGCCGACCTGGTGATGTCGGCACTGAGCATGGCGCTGCAGCAGCGAAGGCCAGCGCCGGGACTGGT
GCTGCACTCGGATAGGGGCAGTCAGTACGCGAGCGCGGAGTATCAGGCCTTGCTGGCACGCCATCAGATTGTTTGCAGCA
TGAGTCGAAAAGGCAATTGCTGGGATAACGCGGTGACGGAACGGTTCTTCCTAAACCTGAAGATGGAGCGCGTGTGGCAG
CGTCAATACGCCAACCACGCCGAGGCACGGCGCGACATCACCCAGTACATCGTTGGTTTCTATAATCCGGTGCGCTTGCA
CTCAACCCTGGGGTATCTGTCGCCCGCTGCCTACGAGGCGAAATCGACAGAAAAAGAACCTATCTGCCTGTCCGAAATAA
CTTGA

Protein sequence : 
MSYRVVAHLQQEAVSVSNACRVLQVSRSGYYAHRRAKPSMKTLQEQTHVKAAFAASGASYGSRRVMHAVREQGVRLGRYR
IRRLMREAGLRATWKRKFVSTTDSKHTLPVAENVLNRQFDVAEPNRAWTSDITYVRTAQGWLYLAVVLDLYSRKVVGWSM
APTMPADLVMSALSMALQQRRPAPGLVLHSDRGSQYASAEYQALLARHQIVCSMSRKGNCWDNAVTERFFLNLKMERVWQ
RQYANHAEARRDITQYIVGFYNPVRLHSTLGYLSPAAYEAKSTEKEPICLSEIT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 6e-41 44
unnamed AAF09030.1 unknown Not tested SHI-O Protein 5e-41 44
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 7e-41 44
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 5e-41 44
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 5e-41 44
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 5e-41 44
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 1e-40 44
unnamed AAF09022.1 unknown Not tested SHI-O Protein 3e-41 44
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 1e-40 44
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-44 43
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-44 43
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-44 43
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 8e-37 43
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 8e-37 43
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 8e-37 43
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 1e-36 43
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 8e-37 43
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 1e-36 43
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 8e-37 43
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 8e-37 43
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 2e-41 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-40 42
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 4e-41 42
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 4e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
insF6 YP_004688715.1 transposase InsF for insertion sequence IS3 VFG1706 Protein 3e-41 44
insF6 YP_004688715.1 transposase InsF for insertion sequence IS3 VFG1122 Protein 5e-37 43
insF6 YP_004688715.1 transposase InsF for insertion sequence IS3 VFG1631 Protein 2e-41 41