Gene Information

Name : tctD1 (CNE_1c05650)
Accession : YP_004684410.1
Strain :
Genome accession: NC_015726
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein TctD
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 570654 - 571343 bp
Length : 690 bp
Strand : -
Note : -

DNA sequence : 
ATGCGCATTCTGATCGCCGAAGATGACGACGTGCTGGCCGACGGCCTGACGCGCTCGCTACGCCACTCGGGCTATGCCGT
CGACCACGTCACCAATGGCCTGGAAGCCGATTCCGCGCTGTCGACCCAGACCTTCGACCTGCTGATCCTGGACCTGGGCC
TGCCGCGCATGTCCGGGCTGGAAGTGCTCAAGCGCCTGCGCGCGCGCGGCGCCATGCTGCCGGTGCTGATCCTGACCGCC
GCCGACAGCGTCGACGAGCGCGTCAAGGGCCTGGACCTTGGGGCCGACGACTATATGGCCAAGCCCTTTGCCCTGTCCGA
ACTGGAAGCGCGCGTACGCGCGCTGGTGCGGCGCGGCGCCGGCGGCGGCGCCACGCTGATGCGGCACGGGCCGCTGGCCT
ACGACCAGGTCGGGCGCATCGCCTATATCAACGACCAGATGCTGGACCTGTCCGCGCGCGAGATCGGGTTGCTGGAGATC
CTGCTGACACGCAGCGGCCGCCTGGTATCGAAAGAGCAGTTGGTGGACCACCTGTGCGAGTGGGGCGAGGAAGTCAGCAA
CAACGCCATCGAGGTCTACGTGCACCGACTGCGCAAGAAGATCGAAGTCGGCGGCATCCGCATCGCCACTGTACGCGGGC
TTGGCTACTGCCTGGAGAAATTCCAGCCGGCGGTGGCCACGCACCACTGA

Protein sequence : 
MRILIAEDDDVLADGLTRSLRHSGYAVDHVTNGLEADSALSTQTFDLLILDLGLPRMSGLEVLKRLRARGAMLPVLILTA
ADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGAGGGATLMRHGPLAYDQVGRIAYINDQMLDLSAREIGLLEI
LLTRSGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGIRIATVRGLGYCLEKFQPAVATHH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-32 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tctD1 YP_004684410.1 transcriptional regulatory protein TctD BAC0487 Protein 4e-29 45
tctD1 YP_004684410.1 transcriptional regulatory protein TctD NC_002516.2.879194.p Protein 4e-25 43
tctD1 YP_004684410.1 transcriptional regulatory protein TctD BAC0083 Protein 4e-29 42
tctD1 YP_004684410.1 transcriptional regulatory protein TctD BAC0308 Protein 9e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tctD1 YP_004684410.1 transcriptional regulatory protein TctD VFG0473 Protein 3e-33 45
tctD1 YP_004684410.1 transcriptional regulatory protein TctD VFG1390 Protein 1e-30 42