Gene Information

Name : pilR (CNE_1c31700)
Accession : YP_004686963.1
Strain :
Genome accession: NC_015726
Putative virulence/resistance : Virulence
Product : type 4 fimbriae expression regulatory protein PilR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3304843 - 3306465 bp
Length : 1623 bp
Strand : -
Note : -

DNA sequence : 
ATGCCACCCCGAATGCCCCGAGCGCCCGACCCCATCCTGGTCATCGACGACGAGGCCGACCTGCGCGAGCTGCTGGACAT
CTCGATCCGCCGCATGGGCCATGACGTGGTGCTGGCCGGCTCCCTGGCCGAGGCGCGCGAGAAGCTGGCACAGGGCCGCT
ACAGCCTGGTGCTGACCGACATGCGGTTGGGCGACGGCCTGGGTATAGAGATCGTGCGCCAGCTGTCGGCCGCGCCGGAG
CGCATCCCGGTGGCGGTCATCACCGCCTACGGCAGCGCCGACAACGCCGTGGAAGCACTCAAGGCCGGCGCCTTCGACTA
CATCGCCAAGCCGGTCTCGCTGGAGCAGCTGCGCAGCCTGGTGCTGAACGCGCTGGGCCGCCAGCAACGCGACAGCACCG
ATGCCGAAGCCGCCGCGGCCGAGCAGGCCGCCGACCGCGCCGCGGCCCTGCTGCCCGGCCATTCCGCCGCCATGCAGGAG
GTTCGCCGCTCGCTGTCGCGGCTGGCGCGCAGCATGGCGCCGGTGGTGATCAGCGGCGAATCCGGCAGCGGCAAGGAGCG
CGCCGCGCGCGCCATTCACGCCACCAGCGGGCGGGCCGCGCATCCCTTTATCGCCGTCAACTGCGGCGCCATCCCCGAGA
ACCTGATGGAGTCCGAGTTCTTCGGCCATGTCAAAGGCGCCTTCACCGGTGCCGACGGGGAGCGCGGCGGCTTCTTCCAG
GCCGCCAACGGCGGCACGCTGCTGCTGGACGAGGTGGCCGACCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGCT
GCAGGAGCGCCGCGTGCGCAAGATCGGCGCCAGCCGCGAAGACGCCGTCGACGTGCGCGTGATGTGCGCCAGCCACAAGG
ACCTGGCCGCGATGGTGGCGGCCGGGCAGTTCCGGCAGGACTTGTACTACCGCCTGAACGTGCTGGCGCTGCGCATGCCC
ACGCTGCGCGAGCGCGGTGAAGACATCCCGGTGCTGGCGCGCGCCATCCTGGACCACCTGGCGGTGCGCTACGGCGACCC
GCGCCCCAAGCGGCTGTCGCCGGCGGCGCTGCAACGGCTGGTGGCCTATCCCTTCCCGGGCAACGTGCGCGAGCTGGAGA
ACCTGCTGGAGCGCGCCTACGCCTTTGCCGAGAGCGAAGAGATCGAGCTGGCCGATCTGGGCCCGCTGGACGCCGGTGCC
GAACGGGCCGGGCTGATGCATGCCCCCGCGCCGGCGATGGCGCCTAACTATTATGCACCCTGGGGTGCCGCAGGCATGTG
GGCGCCGGTGCCGCCGGCCGCCGCGCCCGCGCCGGCCCTGGCAGAACCGCCGCCCGTGGCACCGACCCCAGCCAGCGCGC
CCGAACCCGAGCCCGCCGGCGACCCCGCCGAACGTGCCTGCCGCGGCATCGTCTTCCCGATCGACCTGCCGGCCAGGCTG
GAAGCCGTGGAGCGCGAGCTGATTCTGCAGGCGCTGGCGCAGACCAACTTCAATCGCACCGCGGCCGCGCCGCTGCTGGG
CCTGAACCTGCGCCAGCTGCGCTACCGCATCCAGCAACTGGGCATCCGCGAAGCCATGGACGCCGCCGACCGCAGCGCCG
TGGAAGGCGAGGGCACGCCATGA

Protein sequence : 
MPPRMPRAPDPILVIDDEADLRELLDISIRRMGHDVVLAGSLAEAREKLAQGRYSLVLTDMRLGDGLGIEIVRQLSAAPE
RIPVAVITAYGSADNAVEALKAGAFDYIAKPVSLEQLRSLVLNALGRQQRDSTDAEAAAAEQAADRAAALLPGHSAAMQE
VRRSLSRLARSMAPVVISGESGSGKERAARAIHATSGRAAHPFIAVNCGAIPENLMESEFFGHVKGAFTGADGERGGFFQ
AANGGTLLLDEVADLPLPMQVKLLRALQERRVRKIGASREDAVDVRVMCASHKDLAAMVAAGQFRQDLYYRLNVLALRMP
TLRERGEDIPVLARAILDHLAVRYGDPRPKRLSPAALQRLVAYPFPGNVRELENLLERAYAFAESEEIELADLGPLDAGA
ERAGLMHAPAPAMAPNYYAPWGAAGMWAPVPPAAAPAPALAEPPPVAPTPASAPEPEPAGDPAERACRGIVFPIDLPARL
EAVERELILQALAQTNFNRTAAAPLLGLNLRQLRYRIQQLGIREAMDAADRSAVEGEGTP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-76 47
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-76 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_004686963.1 type 4 fimbriae expression regulatory protein PilR BAC0089 Protein 7e-66 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_004686963.1 type 4 fimbriae expression regulatory protein PilR VFG1214 Protein 3e-90 56
pilR YP_004686963.1 type 4 fimbriae expression regulatory protein PilR VFG1249 Protein 6e-53 41