|
Name : vipA (CNE_2c00250) Accession : YP_004680249.1 Strain : Genome accession: NC_015723 Putative virulence/resistance : Virulence Product : Vi polysaccharide biosynthesis protein vipA/tviB Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : 1.1.1.- Position : 32309 - 33628 bp Length : 1320 bp Strand : - Note : - DNA sequence : ATGCCGACGACGACAGGCTCGACTACTCGGAAGATCACGGTCATGGAACTCAGTCACGCACAAGTCGCCATCATAGGGCT GGGCTATGTCGGCCTGCCGCTCGCGGTGGAGTTCGGCAAGCAGCAGCCCGTGCTGGGCTTCGACGTCAATGCCGCACGCA TCGAAGCACTGCGCGCCGGCCACGACGCCACGCTGGAGGTCAGCCCGGACGAGCTGCGCAGCGCGCACCACCTGCGCTAC AGCAACGATCCCGAAGCGCTGAGGGACTGCCAGGTCTTTATCGTGACCGTGCCCACACCGGTGGACCGGGCCAAGCGCCC CGACCTGACGCCGCTGATCCTGGCGAGCGAGACCGTGGGCAGGGCGATGGCGCCGGGCGCCGTGGTGATCTACGAATCGA CCGTCTACCCGGGCGCCACCGAGGAAATCTGCGTGCCGGTGCTGGAGAGGCACAGCGGCCTGAAGTTCAACGTGGACTTC TTCTGCGGCTACAGCCCGGAGCGCATCAACCCCGGCGACAAGGAGCACCGGCTGCCGGATATCCGCAAGGTCACCAGCGG CAGCACGCCCGAGGCGAGCGAGGCCATCGACAAGCTCTACGGCAGGATCATCGTGGCCGGCACGCACCGCGCCAGCAGCA TCCGCGTGGCGGAGGCGGCCAAGGTCATCGAGAACACCCAGCGCGATGTCAACATCGCGCTGATGAACGAACTCAGCCTG CTGTTCCACAAGCTGGGCATCGACACGCTCGAAGTGCTGCGGGCCGCCGGCACCAAGTGGAATTTCCTGCCGTTCCGCCC GGGCCTGGTCGGCGGGCACTGCATCGGGGTCGATCCCTACTATCTGACGCACAAGGCGCAGGAGGTCGGCTATCACCCGC AGGTCATCCTGGCAGGCCGGCGCATCAACGACAAGATGGCGATCCACGTTGCCGACGAGGTGGTGAAGCTGATGCTGCGC CGGGGCATTCCGGTGCTCGACAGCCGCGTGCTGGTGCTCGGCCTGACGTTCAAGGAGAACTGCCCGGACGTGCGCAACAC CAAGGCCGTGGACATCGTGACCACGCTGCGCAGCTACAACGCTCAGGTCGATGTCTACGACCCGTGGATCAATATCGAAG ACGCCGAGCACGAATACGGCCTGTCCTGCCTGCGCGAGGCCCCGCGCAACGACCAGTACGACGCCATCGTGCTGGCGGTC GCGCACCACCAGTTCGTCACCATGGGCGTGCGGGCGATCAAGGCCCTCGGCAAGGCGCATGCGGTGCTGTTCGACGTCAA GGGCATCCTGCCGAGGAGCGAAATCGACGCACGCCTGTAG Protein sequence : MPTTTGSTTRKITVMELSHAQVAIIGLGYVGLPLAVEFGKQQPVLGFDVNAARIEALRAGHDATLEVSPDELRSAHHLRY SNDPEALRDCQVFIVTVPTPVDRAKRPDLTPLILASETVGRAMAPGAVVIYESTVYPGATEEICVPVLERHSGLKFNVDF FCGYSPERINPGDKEHRLPDIRKVTSGSTPEASEAIDKLYGRIIVAGTHRASSIRVAEAAKVIENTQRDVNIALMNELSL LFHKLGIDTLEVLRAAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQEVGYHPQVILAGRRINDKMAIHVADEVVKLMLR RGIPVLDSRVLVLGLTFKENCPDVRNTKAVDIVTTLRSYNAQVDVYDPWINIEDAEHEYGLSCLREAPRNDQYDAIVLAV AHHQFVTMGVRAIKALGKAHAVLFDVKGILPRSEIDARL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 3e-129 | 58 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 3e-129 | 58 |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 4e-111 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| vipA | YP_004680249.1 | Vi polysaccharide biosynthesis protein vipA/tviB | VFG0431 | Protein | 1e-129 | 58 |
