Gene Information

Name : vipB (CNE_2c00240)
Accession : YP_004680248.1
Strain :
Genome accession: NC_015723
Putative virulence/resistance : Virulence
Product : Vi polysaccharide biosynthesis protein vipB/tviC
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : -
Position : 31163 - 32248 bp
Length : 1086 bp
Strand : -
Note : -

DNA sequence : 
ATGCAAGAGAACGCCTACGCGCACCTCAAGGCCCGCCTGGCCGCCACGCCGCGCACGTGGCTTGTCACCGGCGTCGCCGG
ATTCATCGGCAGCAACCTGCTGGAAACGCTGTTGCGCCTCGACCAGCGCGTGGTCGGCCTGGACAACTTCTCCACCGGGC
ACCGCCGCAACCTCATCGAGGTCGAGGCGCTGGTGTCGCCGCGGCAGTGGGCCAATTTCCGCTTTATCGAAGGCGATATC
CGCAACCTCGAGCACTGCCGCAGCGCCATGCGCTTTTGCGCGCCCGGGCGCGAGGGCGCAGCCAACGGCCTGTACCCGGT
GGACTTCGTGCTGCACCAGGCGGCACTCGGCTCCGTGCCGCGCAGCCTGGAAGACCCAATCGCGACTCACAGCGTCAATA
TCAGCGGATTCCTGAACCTGCTGGTCGCCGCCCGCGACGCGCAGGTCAGTACCTTCGTCTATGCGGCGAGCAGCAGCACC
TACGGCGACCACCCGGGCCTGCCGAAAGTGGAAGACCGCATCGGCAAGCCGCTGAGCCCCTACGCGGTCACCAAGTACGC
CAACGAGCTGTATGCCGACGTCTTCCACCGATGCTACGGCGTGCATGCCACTGGGCTGCGCTACTTCAACGTGTTCGGGC
CGCGCCAGGATCCCAATGGTGCCTATGCGGCGGTGATTCCCAAATGGATCGCAGCCCTGCTACGGCACGAGGCCGTCTAC
ATCAACGGCGACGGAGAAACCAGCCGCGATTTCTGCTACGTCGCGAACGCCGTGCAGGCCAACCTGCTCGCCGCCGCCAG
CGACCACTGCGAGGGGGACAGCCAGGTCTACAACGTGGCGGTCGGCGACCGCACCACGTTGGCCACATTGTTCGAGCTGC
TTCGCGACGGGCTGCGGCCCTACGGCGTCGCCGCCGGCACCGAGCCGGTCTATCGCGGCTTCCGGGCCGGAGACGTGCGC
CACAGCCAGGCCGACATCGGCAAGGCACAACGCCTGCTGGGATACCTGCCCACCCACCGCGTCCGCGACGGGCTGGCTGA
GGCGATGCCTTGGTACGTGCAGATGCAGCAGGCACTGAACGCCTGA

Protein sequence : 
MQENAYAHLKARLAATPRTWLVTGVAGFIGSNLLETLLRLDQRVVGLDNFSTGHRRNLIEVEALVSPRQWANFRFIEGDI
RNLEHCRSAMRFCAPGREGAANGLYPVDFVLHQAALGSVPRSLEDPIATHSVNISGFLNLLVAARDAQVSTFVYAASSST
YGDHPGLPKVEDRIGKPLSPYAVTKYANELYADVFHRCYGVHATGLRYFNVFGPRQDPNGAYAAVIPKWIAALLRHEAVY
INGDGETSRDFCYVANAVQANLLAAASDHCEGDSQVYNVAVGDRTTLATLFELLRDGLRPYGVAAGTEPVYRGFRAGDVR
HSQADIGKAQRLLGYLPTHRVRDGLAEAMPWYVQMQQALNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 1e-99 60
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 1e-99 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
vipB YP_004680248.1 Vi polysaccharide biosynthesis protein vipB/tviC VFG0430 Protein 5e-100 60