Gene Information

Name : fliI (midi_01123)
Accession : YP_004680086.1
Strain : Candidatus Midichloria mitochondrii IricVA
Genome accession: NC_015722
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis/type III secretory pathway ATPase fliI
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 1065769 - 1067106 bp
Length : 1338 bp
Strand : +
Note : -

DNA sequence : 
ATGCAGAGGAAACTGCAAAATTTGATTGGAGAGGTACGGGCTATACCAGACTTCATGGTGAGCGGTGTTGTCACGGCTGT
TAAGGGTCTATTAGTAGAAGCTAAAGGAATAGAAAAAATGGCCTATATTGGCTCACGTTGCCAAATTGAAGCACGTGATG
ATCATCATATTTTAGCCGAAGTAATAGGTTTTGAAGAGAATACTACTCTCTTAATGCCCTTCGATAATATCAATGGAATA
GGTGTTGGAGCGGTTATTAGAGTAATAGCTAATGATCAATTAATTTATCCGACTAAACAATGGGTAGGCCGAGTACTCAA
TGCGTTTGGAGAGCCAATTGATGGAAAAGGCCCTCTGCCCCTTGGCAACAAAGCATATTCTCTGCACTCCACTCCACCCG
CTCCTCAGGCACGCAAGAGGGTTGGTGAAAAGCTAAATGTTGGTATTAGAGCAATAAACACCTTCTTATCCTGCTGCAAG
GGCCAAAGAATGGGTATCTTCTCCGGCTCAGGAGTTGGCAAGTCTATGATGATGGCAATGATGACGAAATTTGCTTCTGC
AGATATCAAAATAATAGGTCTAATAGGCGAAAGAGGAAGAGAGGTCCAGGAGTTTATAGAAGACTATCTTGGTGAAGAGG
GATTGAGAAAAGCAGTAGTTGTTGTTGCAACTTCTGATGAATCAGCCTTAAAGCGCAGACGAGCTGCTTACCTTACTTTA
ACACTCAGCGAATACTTTAGAGATTCTAACTTGGAAGTGTTATGTATGCTTGATAATATAACCAGGTTTGCTATGGCCCA
AAGAGAAATAGGATTAGCCGTTGGCGAGCCTCCAACAACGAAAGGCTATCCACCAAGTGTTTTTAGTGGGCTACCTTCTC
TATTAGAAAGAGCAGGCCCTGGAACTCACGACCAGGCTTCTATTACTGCTTTTTTCAGTGTTTTAGTGGAAGGAGATGAT
ACTAATGAACCAATTGCTGATGCAGTTAGGGGAATTTTAGATGGTCATATCGTGCTAGACAGAGATATAGCTGGTAGAGG
AATATTTCCAGCTATTGATGTCGCCAAAAGCATATCGAGAACAATGCCTCGATGTAATAACGATAAGGAAAATGAGTTAA
TACAGAAAGCTAAAAAACTTATTGCTACTTATAACGATATGGCTGATATGGTGAGAATAGGTGCTTATAAGAAAGGTACT
GATAAAGAAGTAGACGAAGCAATTCAATATTATGATAAAATTTGCTCATTCATTTCTCAAAAATATAATGAAAGCGAAGA
TATAAAGGGGTCATATGAAAAGCTTGCTAAAGCTATTAATTTTAAGTTTAATAACTAG

Protein sequence : 
MQRKLQNLIGEVRAIPDFMVSGVVTAVKGLLVEAKGIEKMAYIGSRCQIEARDDHHILAEVIGFEENTTLLMPFDNINGI
GVGAVIRVIANDQLIYPTKQWVGRVLNAFGEPIDGKGPLPLGNKAYSLHSTPPAPQARKRVGEKLNVGIRAINTFLSCCK
GQRMGIFSGSGVGKSMMMAMMTKFASADIKIIGLIGERGREVQEFIEDYLGEEGLRKAVVVVATSDESALKRRRAAYLTL
TLSEYFRDSNLEVLCMLDNITRFAMAQREIGLAVGEPPTTKGYPPSVFSGLPSLLERAGPGTHDQASITAFFSVLVEGDD
TNEPIADAVRGILDGHIVLDRDIAGRGIFPAIDVAKSISRTMPRCNNDKENELIQKAKKLIATYNDMADMVRIGAYKKGT
DKEVDEAIQYYDKICSFISQKYNESEDIKGSYEKLAKAINFKFNN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL06369.1 EscN Virulence LEE Protein 2e-68 46
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 6e-83 45
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 2e-80 44
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-80 44
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 2e-80 44
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-80 44
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-80 44
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-73 44
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-73 44
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-74 44
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-74 44
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 2e-74 44
escN CAC81862.1 EscN protein Virulence LEE II Protein 4e-70 44
escN YP_003236088.1 translocator EscN Virulence LEE Protein 4e-70 44
escN AAC31513.1 L0034 Virulence LEE Protein 7e-70 44
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 7e-70 44
escN CAI43874.1 EscN protein Virulence LEE Protein 5e-70 44
escN NP_290268.1 hypothetical protein Virulence LEE Protein 1e-69 44
ECs4568 NP_312595.1 EscN Virulence LEE Protein 1e-69 44
escN AAK26715.1 EscN Virulence LEE Protein 1e-69 44
escN AAL57542.1 EscN Virulence LEE Protein 1e-69 44
escN YP_003223475.1 translocator EscN Virulence LEE Protein 6e-70 44
lscN AAO18044.1 LscN Virulence TTSS locus Protein 9e-82 43
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-78 43
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 1e-78 43
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-79 43
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 5e-80 43
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 7e-68 43
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 7e-68 43
escN AAC38383.1 EscN Virulence LEE Protein 9e-70 43
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 6e-70 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI YP_004680086.1 flagellar biosynthesis/type III secretory pathway ATPase fliI VFG2499 Protein 7e-83 45
fliI YP_004680086.1 flagellar biosynthesis/type III secretory pathway ATPase fliI VFG1254 Protein 1e-83 44
fliI YP_004680086.1 flagellar biosynthesis/type III secretory pathway ATPase fliI VFG0390 Protein 1e-82 44
fliI YP_004680086.1 flagellar biosynthesis/type III secretory pathway ATPase fliI VFG0515 Protein 1e-74 44
fliI YP_004680086.1 flagellar biosynthesis/type III secretory pathway ATPase fliI VFG0812 Protein 4e-70 44
fliI YP_004680086.1 flagellar biosynthesis/type III secretory pathway ATPase fliI VFG2144 Protein 7e-82 43
fliI YP_004680086.1 flagellar biosynthesis/type III secretory pathway ATPase fliI VFG2331 Protein 7e-78 43
fliI YP_004680086.1 flagellar biosynthesis/type III secretory pathway ATPase fliI VFG0730 Protein 5e-70 43
fliI YP_004680086.1 flagellar biosynthesis/type III secretory pathway ATPase fliI VFG0192 Protein 3e-82 42
fliI YP_004680086.1 flagellar biosynthesis/type III secretory pathway ATPase fliI VFG0048 Protein 6e-83 42