Gene Information

Name : HYPMC_0824 (HYPMC_0824)
Accession : YP_004674631.1
Strain : Hyphomicrobium sp. MC1
Genome accession: NC_015717
Putative virulence/resistance : Unknown
Product : Integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 812409 - 813638 bp
Length : 1230 bp
Strand : +
Note : -

DNA sequence : 
ATGCCATTGACCGATGCCGCGATCCGGGCGGCCAAACCCGGACCCTCACCTTTCAAGATTAGTGACGGCGGCGGGCTGCA
CCTGCTCGTCCAAACCGGCGGCACGAAGCTTTGGCGGCTCGCCTACCGCTTCGCTGGAAAACAGAAGACGTTGGCGATGG
GTGTCTACCCGACGATTGCTCTCGCAAAGGCGCGAGAGGGCCGGGAGAAGGCGAAGCGGTTGTTGGCCGATGGCATCGAC
CCCGCTGCTCAGAAGCGGCGGGACAAGATCGCCGCAAAGGTTTCCGCCGACGCGACGTTCAGATCGATCGCTCTCGAATA
CATTGCCGATCGCCGCCACGCTTTGACGCCACTATACGCGGACCAAATCCTGAGACGGTTGGAAGCCGACATCTTCCCGG
CGCTGGGAAATAGGCCGATCGCGGACATTGATGCTCCCGAACTCCTCGAGACGCTGCGCAAGGTTGAGAAGCGCGGAGCA
CTAGAACAGGCAAAGCGCTTGCGTCAGACGTGCGGTCAAATCTTTCGCTACGCCGTCGTCACGAGCCGCGCCAAGCATGA
TCCATCGGCTGCGCTCAAGGGCGCCTTGAAGCCGAAAGGGCGGCAACGGCATCACAAGCCGATGCCCCGGCATGATTTGC
CCGGATTTCTGCGCACGATCGATGACTATTACGGCGAGCCGCGAACGGGTCTTGCGCTCCGCTTGATCGTGCTGACGATG
GTGCGAACGACCGAGCTACGTGCGGGGCGCTGGGAAGAATTTGAAAATCTCGACGGCGACGAGCCGCTATGGCGCATTCC
CGCCGAGCGGATGAAGGCCCGCTTCGAACATCTCGTGCCATTGTCGCGCCAAGCGGTGGCCGCACTCAACGAGTTGCGTG
CGATGCCCGGCGCCAAGGCGGAAGGCTTTCTGTTTCCGTCTCCGTCAAAACAAGGCTGCATGTCGAATAACTGCATGCTC
TACGCACTTTATCGCCTCGGCTATCACGGCCGCGCAACGATTCATGGTTTTAGAGGCGTTGCCTCGACACTGCTGAACGA
AGCTGGGTTCGATGACGATTGGATCGAAAAACAGCTTGCGCACGATGAACGGGACGAGACGCGCGCTGCTTACAATGCTG
CGGAATATTTGGCAGGTCGCCGCTCGATGCTGCAGTGGTGGGCCGATTGGCTTGAGCAGATCAAAGTGACCGGCCGAATT
GTGGTGCTCGCTCGCGAGGTGGCGGCATGA

Protein sequence : 
MPLTDAAIRAAKPGPSPFKISDGGGLHLLVQTGGTKLWRLAYRFAGKQKTLAMGVYPTIALAKAREGREKAKRLLADGID
PAAQKRRDKIAAKVSADATFRSIALEYIADRRHALTPLYADQILRRLEADIFPALGNRPIADIDAPELLETLRKVEKRGA
LEQAKRLRQTCGQIFRYAVVTSRAKHDPSAALKGALKPKGRQRHHKPMPRHDLPGFLRTIDDYYGEPRTGLALRLIVLTM
VRTTELRAGRWEEFENLDGDEPLWRIPAERMKARFEHLVPLSRQAVAALNELRAMPGAKAEGFLFPSPSKQGCMSNNCML
YALYRLGYHGRATIHGFRGVASTLLNEAGFDDDWIEKQLAHDERDETRAAYNAAEYLAGRRSMLQWWADWLEQIKVTGRI
VVLAREVAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAC39282.1 integrase Not tested LPA Protein 8e-82 46
aec33 AAW51716.1 Int Not tested AGI-3 Protein 5e-82 46
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-80 45
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-80 45
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-80 45
int ACU09430.1 integrase Not tested LEE Protein 1e-80 45
int AAD44730.1 Int Not tested SHI-2 Protein 1e-80 45
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-79 45
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-79 45
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-79 45
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 9e-80 44
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 3e-83 44
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 1e-63 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 8e-65 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 3e-65 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-65 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-65 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 9e-65 41
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 4e-62 41
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 4e-62 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HYPMC_0824 YP_004674631.1 Integrase VFG0783 Protein 6e-81 45
HYPMC_0824 YP_004674631.1 Integrase VFG0598 Protein 1e-79 45