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Name : lcrD (HYPMC_3494) Accession : YP_004677271.1 Strain : Hyphomicrobium sp. MC1 Genome accession: NC_015717 Putative virulence/resistance : Virulence Product : Low calcium response locus protein D Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 3354785 - 3356878 bp Length : 2094 bp Strand : - Note : - DNA sequence : GTGAAGATCCTGCAGCGGTTCCTGCAAGTCGCATCGGGACGGAACGACATCGTTCTGGCCGTGCTTCTTATTGCGATCAT CTTCATGATGATCATTCCGCTGCCGCCTGTCGTCATGGACATGCTGCAGGCATTGAACCTCACCATCTCCGCAATCCTTT TGATGGTGGCGGTCTACATCAAATCGCCGCTGGCCTTTGTCAGCTTTCCATCACTCCTGCTGCTGACAACTCTATTCCGC TTATCGCTCGGCATCGCTTCTACTCGTCTGATCCTGCTTGAGGCCAATGCTGGCGACATCATCACCACTTTCGGCAACTT TGTGGTCGCCGGAAACTTGGTGGTCGGAGCGGTCATTTTCTTGATCATCACGATCGTTCAGTTCATCGTGATCACAAAAG GCTCGGAACGCGTCGCAGAGGTCGCAGCCCGCTTCTCACTCGATGCTATGCCTGGAAAGCAGATGAGTATCGACGGCGAT ATGCGTGCCGGCACCATAGACATGAACGAGGCTCGTCGCCGCCGAGGCATGGTGGAGAAGGAGAGCCAGCTTTACGGTGC CATGGACGGCGCTATGAAGTTTGTGAAGGGTGATGCCATCGCGGGCCTGATCGGCATCGCGGTGAACTTGCTCGGCGGTA TTGCTATCGGTGCGGGTCAGCTCGGTATGTCAGTTTCCGACGCGGTGAACACCTACTCCATTCTGACGATCGGCGATGGC CTGGTTGGGCAGATTCCGGGACTGTTCACCTCGATTACAGCAGGCTTCATCGTCACGCGCGTCTCCAGCGAGGAAGCGGG AACAAATCTTGGAGACGAAATCGGCGGCGAGGTCACCGCGCAGCCGAAGGCGCTTATGGTTGCTTCTTCCATCTTGGTGA TTTTTGCAGTCATTCCGGGTTTTCCGACCACAATTTTCTTGGCACTTGCTGTCCTGTCGGGCGGCGGGGGCTACATGCTG CACCGTCAGGCCACTATGCCAAAGCAGGATGGAGATCCGTTTTCCGCCAATCTGCCGGCAGCGTCGGCCAGCGGTGGTAC TCCAACGGTGCGCCGCGCTGGCAATGATGCGGACGATTTTTCTCTGACGGTGCCGGTGATGGTTGATGTCGGCACTGACG TACAAACCTTGATCCGTCCCGACGCTCTGAACGATACCCTCGCACAGGTGCGCCGCGCACTTTACTACGATCTAGGCGTG CCGTTCCCGGGTATCAATTTGCGTCTCAACGACCGTTATAACGGCGGCCGCTATGTCATCTTGCTCAACGAAGTACCCTG CGGAGAAGGGCACATGCGTTCGGGCTTTCTGCTGGCTCGCGATTCCGTTGAGAACCTGTCGCTGCTTGGCATTCCCAATG AGACCGATAAGCCTTTCCTACCATTAATAGAGACGATTTGGGTCGCGCAGGAACACCGGCCCGCGCTCGAGGCAGGTTCC GTCAGCTTCATGGAGCCTGCGCAGCTGCTCAGCTATCATATCGGCCATGTGCTTCGGCGCTATGCTGAGGAGTTCATTGG TATCCAAGAAACGCGCTTTCTCCTTTCTCGGATGGAAGAACGGTTTCCCGAGCTGGTGAAAGAGGTGCAGCGGATCGTGC CGTTGCAACGGATTGCGGAGATCTTGCAGCGCTTGGTTTCAGAAGGCGTTTCGGTGCGCAACATGCGGGCAATCCTGACG GCGCTGATCGATTGGGGCCAGAAGGAAAAGGACGTCGTCCTCCTTACTGAACATATCCGCGGCGCACTCAAGAGGCAGAT CTGCTACCGTCATTCCAGTGGGCTCAACATTCTGCCCGCCTATGTTGTTACACCGGAACTGGAGGATACGGTGCGCAACG CCGTCCGGCAGACATCCTCTGGCAGCTACTTGGCGTTAGACCCGCGGACGACGCGTCAGATCATCGAGAAAGTGCAGGGC GCGTTGGGCGGTGTCGGGCAGCAAGCTCGTAAGCCAGTGCTGCTCACGGCTATGGATATTCGCCGTTATGTAAAGAAAAT CGTCGAAGGTGATTGTCCCGATCTGCCTGTCCTATCCTATCAAGAACTGACGCCGGAGATCACGGTGCAACCGCTGGCGA GGGTATCACTGTGA Protein sequence : MKILQRFLQVASGRNDIVLAVLLIAIIFMMIIPLPPVVMDMLQALNLTISAILLMVAVYIKSPLAFVSFPSLLLLTTLFR LSLGIASTRLILLEANAGDIITTFGNFVVAGNLVVGAVIFLIITIVQFIVITKGSERVAEVAARFSLDAMPGKQMSIDGD MRAGTIDMNEARRRRGMVEKESQLYGAMDGAMKFVKGDAIAGLIGIAVNLLGGIAIGAGQLGMSVSDAVNTYSILTIGDG LVGQIPGLFTSITAGFIVTRVSSEEAGTNLGDEIGGEVTAQPKALMVASSILVIFAVIPGFPTTIFLALAVLSGGGGYML HRQATMPKQDGDPFSANLPAASASGGTPTVRRAGNDADDFSLTVPVMVDVGTDVQTLIRPDALNDTLAQVRRALYYDLGV PFPGINLRLNDRYNGGRYVILLNEVPCGEGHMRSGFLLARDSVENLSLLGIPNETDKPFLPLIETIWVAQEHRPALEAGS VSFMEPAQLLSYHIGHVLRRYAEEFIGIQETRFLLSRMEERFPELVKEVQRIVPLQRIAEILQRLVSEGVSVRNMRAILT ALIDWGQKEKDVVLLTEHIRGALKRQICYRHSSGLNILPAYVVTPELEDTVRNAVRQTSSGSYLALDPRTTRQIIEKVQG ALGGVGQQARKPVLLTAMDIRRYVKKIVEGDCPDLPVLSYQELTPEITVQPLARVSL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 1e-176 | 57 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 9e-115 | 44 |
| ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 9e-97 | 43 |
| ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 9e-97 | 43 |
| ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 5e-97 | 43 |
| escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 2e-104 | 43 |
| escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 2e-104 | 43 |
| escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 3e-104 | 43 |
| ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 3e-104 | 43 |
| unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 1e-104 | 43 |
| escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 6e-105 | 43 |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 4e-102 | 43 |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 2e-102 | 43 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 4e-103 | 43 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 3e-97 | 42 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 3e-97 | 42 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 6e-97 | 42 |
| escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 3e-104 | 42 |
| escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 2e-104 | 42 |
| escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 2e-104 | 42 |
| escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 2e-104 | 42 |
| escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 2e-104 | 42 |
| escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 5e-104 | 42 |
| escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 3e-104 | 42 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-105 | 42 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-105 | 42 |
| invA | YP_217815.1 | invasion protein | Virulence | SPI-1 | Protein | 9e-103 | 42 |
| invA | NP_457290.1 | possible secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 9e-103 | 42 |
| invA | NP_806499.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 9e-103 | 42 |
| invA | NP_461817.1 | needle complex export protein | Virulence | SPI-1 | Protein | 9e-103 | 42 |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 2e-97 | 42 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 2e-84 | 41 |
| ECs3731 | NP_311758.1 | EivA | Not tested | LIM | Protein | 2e-102 | 41 |
| ysaV | AAS66840.1 | YsaV | Not tested | SSR-1 | Protein | 3e-103 | 41 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 4e-95 | 41 |
| hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 7e-97 | 41 |
| hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 7e-97 | 41 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 3e-95 | 41 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 9e-98 | 41 |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 7e-98 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lcrD | YP_004677271.1 | Low calcium response locus protein D | VFG0064 | Protein | 2e-177 | 59 |
| lcrD | YP_004677271.1 | Low calcium response locus protein D | VFG0198 | Protein | 3e-164 | 58 |
| lcrD | YP_004677271.1 | Low calcium response locus protein D | VFG0384 | Protein | 2e-177 | 58 |
| lcrD | YP_004677271.1 | Low calcium response locus protein D | VFG2126 | Protein | 6e-123 | 45 |
| lcrD | YP_004677271.1 | Low calcium response locus protein D | VFG0813 | Protein | 1e-104 | 43 |
| lcrD | YP_004677271.1 | Low calcium response locus protein D | VFG0729 | Protein | 3e-105 | 43 |
| lcrD | YP_004677271.1 | Low calcium response locus protein D | VFG2461 | Protein | 1e-96 | 43 |
| lcrD | YP_004677271.1 | Low calcium response locus protein D | VFG0514 | Protein | 1e-97 | 42 |
| lcrD | YP_004677271.1 | Low calcium response locus protein D | VFG1780 | Protein | 2e-101 | 42 |
| lcrD | YP_004677271.1 | Low calcium response locus protein D | VFG0557 | Protein | 4e-103 | 42 |
