Gene Information

Name : yscR (HYPMC_3468)
Accession : YP_004677245.1
Strain : Hyphomicrobium sp. MC1
Genome accession: NC_015717
Putative virulence/resistance : Virulence
Product : Yop proteins translocation protein R
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 3325083 - 3325763 bp
Length : 681 bp
Strand : -
Note : -

DNA sequence : 
TTGAACGGCTTGGCTAACGGCATGGGGATGCCAGATCCAGCCACGCTTATCGTTCTGCTTACAGCAGTGGCACTGCTTCC
CTTCATCGCCATTATGGCGACCACCTATGTGAAGTTGGTCGTGGTACTGGGGCTCGTTCGCAACGCGCTCGGCGTCCAGA
ACGTGCCGCCGAACATGGCGCTGAATGGGATCGCCATTATCCTGACTGTCTACATCATGGCACCCGTTGCTATCGCTTCC
TATCAGGCGGTGCGTGACCGCCCGGTGGATACACGGAATATGGAAAGCTTAGCCGACATCGCTCGGGACGGCGCTAAGCC
CTTCCTCCACTTCCTCGAACGCAATACCACCCCGGCCGATCGGGCCTTCTTTGTCGACACTACGCATCGTCTGTGGCCGA
AGGATCAAGCGGATAGCGTAACCGATCACGATATTTTGGTGCTAGTTCCGGCGTTCACAACGGCCGAGCTGACTAAGGCG
TTCAAGGCTGGTTTCCTACTGTTTCTGCCTTTTATCGTGATTGACTTGATCGTCTCCAACATATTGCTGGCGATGGGAAT
GATGATGGTCTCACCAATGACGATCTCTCTACCGTTTAAGCTGTTCCTCTTTGTGATCGTCAACGGGTGGCAGAAACTGA
TCCAGGGACTTGTACTCTCCTATGCGGGGACCGCTGGCTGA

Protein sequence : 
MNGLANGMGMPDPATLIVLLTAVALLPFIAIMATTYVKLVVVLGLVRNALGVQNVPPNMALNGIAIILTVYIMAPVAIAS
YQAVRDRPVDTRNMESLADIARDGAKPFLHFLERNTTPADRAFFVDTTHRLWPKDQADSVTDHDILVLVPAFTTAELTKA
FKAGFLLFLPFIVIDLIVSNILLAMGMMMVSPMTISLPFKLFLFVIVNGWQKLIQGLVLSYAGTAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-55 55
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 8e-41 52
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 6e-41 52
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-44 51
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-39 51
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-39 51
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-50 50
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-50 50
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-49 50
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-49 50
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-49 49
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-49 49
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-49 49
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-49 49
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 4e-38 49
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 4e-38 49
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-41 48
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-41 48
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-41 48
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 3e-42 48
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-41 47
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-40 44
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-40 44
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-40 44
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 7e-41 44
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-40 44
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-41 44
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-41 44
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 8e-41 44
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-41 43
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 3e-41 43
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-41 43
unnamed AAL06354.1 EscR Virulence LEE Protein 2e-41 43
escR AAC38369.1 EscR Virulence LEE Protein 2e-40 43
escR AAC31528.1 L0049 Virulence LEE Protein 2e-41 43
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-41 43
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 3e-41 43
escR AAK26700.1 EscR Virulence LEE Protein 2e-41 43
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 3e-41 43
escR AAL57527.1 EscR Virulence LEE Protein 2e-41 43
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 3e-41 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscR YP_004677245.1 Yop proteins translocation protein R VFG0394 Protein 9e-54 55
yscR YP_004677245.1 Yop proteins translocation protein R VFG0044 Protein 9e-52 54
yscR YP_004677245.1 Yop proteins translocation protein R VFG0188 Protein 2e-55 54
yscR YP_004677245.1 Yop proteins translocation protein R VFG0519 Protein 4e-41 44
yscR YP_004677245.1 Yop proteins translocation protein R VFG0827 Protein 1e-41 43
yscR YP_004677245.1 Yop proteins translocation protein R VFG0715 Protein 1e-40 43
yscR YP_004677245.1 Yop proteins translocation protein R VFG2338 Protein 2e-30 42