Gene Information

Name : yscU (HYPMC_3465)
Accession : YP_004677242.1
Strain : Hyphomicrobium sp. MC1
Genome accession: NC_015717
Putative virulence/resistance : Virulence
Product : Yop proteins translocation protein U
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4792
EC number : -
Position : 3322959 - 3324002 bp
Length : 1044 bp
Strand : -
Note : -

DNA sequence : 
GTGAGTGGCGAGAAAACAGAACAACCTACGGCCAAGAAGTTACGCGATGCGCGAAAGAAGGGGCAGGTCGTTTCCAGCAA
GGAGATTACCTCATCCCTCCTTATCCTGTCTTTCTTCACGTTGCTGGCTGCCACCCTGCCAGGGTTAGTCGAGCGTCTTG
AGCGTCTAATCCTGCTCCCAGTTCCGTTTCTCGATCTGGATCTCATGGATGCTGCACCACCTCTTCTGTGGGATTTTGCT
TGGGCGATGATCATCATCCTCATTCCATTCCTGATGATCGCGGTAATCGGCACCATCGTCGCGACGACGGGGCAGTTCGG
ATTGTTGATGAGCTTCGAGGCGGTGAAGCCATCGATGAAAAAGCTTAACCCGGCACAATACTTCAAGAAGACTTTCGGTC
TTCAAAATCTCATCGAGTTCCTGAAGTCGCTGATCAAGATCGCCGTACTATCTTTTATCATCTACATCATCATTCGAGAT
GGTTTAAACGCCATGGTGCTGGCGCCGAGTTGTGGCGTGCCCTGTCTACGTGCTGTTCTGGGCGAGATGCTATTCACCCT
CGCGACTTGGTGCACCGCGCCCTTTGTAATCATTGCCGCCGGCGACTACTTCTTCCAGAAGTGGCAGTTCAACAAGAAGA
ACATGATGTCGAAGGACGAGGTGAAGCGCGAATACAAGGAGAGCGAAGGTAACCCTGAGGTCAAGGGTATGCGCAAGCAA
CTCCATCAGCAGATGCTTCAAGAAGGCAGTGTTGATCGAGCCCGGAAGGCGACAGTATTGGTCACCAATCCCACTCATAT
CGCAATTGCTATTTTCTATGATCGGGATACGACGCCACTGCCCATTGTTACTGCAATGGGCAAGGGGACAGTTGCGTATC
GCATGATCGAGGCAGCAACGGAGGCCGGCGTGCCGGTTATGCGGAATGTGCCATTGGCCCGCGCTTTGCTCGATGAAGGG
GGGATCGACCAGCATATACCGACCGATCTGATTGAATCTTTCGCAGAAGTACTGCGAGCGGTTCAGAATCTGACGCCCCA
TTGA

Protein sequence : 
MSGEKTEQPTAKKLRDARKKGQVVSSKEITSSLLILSFFTLLAATLPGLVERLERLILLPVPFLDLDLMDAAPPLLWDFA
WAMIIILIPFLMIAVIGTIVATTGQFGLLMSFEAVKPSMKKLNPAQYFKKTFGLQNLIEFLKSLIKIAVLSFIIYIIIRD
GLNAMVLAPSCGVPCLRAVLGEMLFTLATWCTAPFVIIAAGDYFFQKWQFNKKNMMSKDEVKREYKESEGNPEVKGMRKQ
LHQQMLQEGSVDRARKATVLVTNPTHIAIAIFYDRDTTPLPIVTAMGKGTVAYRMIEAATEAGVPVMRNVPLARALLDEG
GIDQHIPTDLIESFAEVLRAVQNLTPH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscU AAO18037.1 LscU Virulence TTSS locus Protein 3e-58 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscU YP_004677242.1 Yop proteins translocation protein U VFG0041 Protein 3e-58 44
yscU YP_004677242.1 Yop proteins translocation protein U VFG0397 Protein 3e-54 43