|
Name : kdpB (HYPMC_3101) Accession : YP_004676884.1 Strain : Hyphomicrobium sp. MC1 Genome accession: NC_015717 Putative virulence/resistance : Unknown Product : potassium-transporting ATPase subunit B Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG2216 EC number : 3.6.3.12 Position : 2969172 - 2971280 bp Length : 2109 bp Strand : - Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 6146979, 92202140, 93167625, 9858692; Product type t : transporter DNA sequence : ATGGATACGTCTATGGCGCGTAAGAAAAGCTCGGCGACAATGCTCGATCCCAAGATCGTCGTTCCGGCAATCGGTTCGGC CTTCGCGAAGCTTGATCCGCGCAAGATGATCAAAAATCCGATCATGTTCGTTCTTGAAGTCGTGACGGTCTTGACCTCGA TCATCTTTCTCCACGACATGGTAACGGGCGAAGGTAACTTGGCGTTCACGTTCCAGATCATCCTGTGGCTTTGGTTCACT GTGCTTTTCGCAAACTTTGCGGAGGCCATCGCGGAAGGTCGCGGCAAGGCTCAAGCAGACTCCCTGCGTGTTCAGCGCCA GGAAACGCAAGCCAAGCTGATGACGGGATCGGGCCGCAGCTACAAGCTCGTTCCCGGAACCACGCTGAAAGTCGGAGACG TGGTCCTTGTCGAGCCGGGCGACACCATTCCCTCCGATGGCGAAGTCATCGAAGGTGTCGCGTCGGTCAATGAAGCCGCG ATCACCGGTGAATCAGCGCCGGTCATTCGTGAGTCCGGCGGCGATAGGTCGGCAGTGACGGGCGGCACACTCGTGTTGTC GGACTGGATCGTCGTCCGAATCACGGCGGCCCAGGGTTCGACTTTTATTGATCGCATGATCAAGCTTGTCGAAGGCGCGG AACGCCAGAAAACACCCAACGAAATCGCACTCAACATTCTTCTCGCCGGCCTCACGATCATCTTCGTCTTCGCGACCGCA ACGATCCCGAGCTATGCCGCTTATGCCGGCGGCACGATCTCGGTCATCGTCCTTGTCGCGCTCTTCGTTACGCTCATCCC GACGACGATCGGCGCGCTGCTTTCAGCTATCGGTATCGCCGGCATGGATCGCCTTGTGCGTTTTAACGTTCTTGCGATGT CGGGCCGAGCCGTTGAAGCCGCTGGCGACGTCGACACGCTCCTTCTCGATAAAACCGGAACGATCACGCTCGGCAACCGT CAGGCAACCGAATTCGTACCGCTGTCCGGCGTCAGCGAGTCGGAACTCGCGGATGCCGCCCAGCTCGCATCTCTGGCTGA CGAGACGCCGGAAGGTCGCTCGGTGGTTATTCTCGCTAAAGAGAAGCATGGCATTCGCGGTCGAGATGTTGCGGATATTA AAGCGCACTTCATTCCGTTCACGGCCCAGAGCCGCATGAGCGGCGTAGAATTCGAGGGATCGTCGATCCGTAAAGGTGCT GTGGACGCTGTGTTGAAATACCTAAACGCCCCGGTCGCGACTCTCTCGTCTGGTGCAACTGCGCAGGTGCTTCGTCCGGC CATCACCGCCGAAGCCACACGCGAGATCAAGGCTATCACGGAAACGGTAGCGAAAGCGGGCGGGACACCGCTGGCGGTCG CTAAGGACGGCCGCTTGCTCGGCGTCATCCACCTCAAAGATATCGTCAAAGGCGGTATTCGTGAGCGCTTCGCCGAGCTT CGCCGCATGGGCATTCGCACAGTGATGATCACTGGCGACAACCCGATGACGGCGGCCGCTATCGCCGCTGAAGCCGGCGT CGACGACTTTCTTGCGCAGGCAACACCGGAAGACAAATTGCGCCTCATCCGCGACGAGCAAGCGAAAGGCAAGTTGGTCG CCATGTGCGGCGACGGCACTAACGATGCGCCGGCCCTTGCTCAGGCGGACGTCGGCGTCGCGATGAACACCGGAACGGTC GCCGCCCGCGAAGCCGGCAACATGGTCGATCTCGACAGCAACCCGACGAAGCTCATCGAGATTGTCGAAATCGGCAAACA GCTATTGATGACGCGCGGCGCGCTGACGACGTTCTCGATTGCGAACGACGTCGCCAAATACTTCGCGATCATTCCGGCGA TGTTTGTTGCTTTCTATCCGCAGCTTAACGCGCTCAACATCATGGCGCTCGGTAGCCCCCAAAGCGCGATCCTGTCGGCG ATCATCTTCAACGCTCTGATCATCATCGCGCTGATCCCGTTGGCGCTGAAGGGCGTCGCCTATCGCGCGATCGGTGCCGG ACCGCTGCTCCGCCGCAACCTGCTGATTTACGGGCTCGGCGGCGTCGTCGTCCCCTTCATCGGCATCAAGGCCATCGACT TGGCCATCAACGCTCTGCATCTCGCTTGA Protein sequence : MDTSMARKKSSATMLDPKIVVPAIGSAFAKLDPRKMIKNPIMFVLEVVTVLTSIIFLHDMVTGEGNLAFTFQIILWLWFT VLFANFAEAIAEGRGKAQADSLRVQRQETQAKLMTGSGRSYKLVPGTTLKVGDVVLVEPGDTIPSDGEVIEGVASVNEAA ITGESAPVIRESGGDRSAVTGGTLVLSDWIVVRITAAQGSTFIDRMIKLVEGAERQKTPNEIALNILLAGLTIIFVFATA TIPSYAAYAGGTISVIVLVALFVTLIPTTIGALLSAIGIAGMDRLVRFNVLAMSGRAVEAAGDVDTLLLDKTGTITLGNR QATEFVPLSGVSESELADAAQLASLADETPEGRSVVILAKEKHGIRGRDVADIKAHFIPFTAQSRMSGVEFEGSSIRKGA VDAVLKYLNAPVATLSSGATAQVLRPAITAEATREIKAITETVAKAGGTPLAVAKDGRLLGVIHLKDIVKGGIRERFAEL RRMGIRTVMITGDNPMTAAAIAAEAGVDDFLAQATPEDKLRLIRDEQAKGKLVAMCGDGTNDAPALAQADVGVAMNTGTV AAREAGNMVDLDSNPTKLIEIVEIGKQLLMTRGALTTFSIANDVAKYFAIIPAMFVAFYPQLNALNIMALGSPQSAILSA IIFNALIIIALIPLALKGVAYRAIGAGPLLRRNLLIYGLGGVVVPFIGIKAIDLAINALHLA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ef0088 | AAM75291.1 | EF0088 | Not tested | Not named | Protein | 6e-167 | 59 |
| kdpB | NP_814334.1 | potassium-transporting ATPase subunit B | Not tested | Not named | Protein | 8e-167 | 59 |
| kdpB | BAA82181.1 | potassium-transporting ATPase(B chanin) | Not tested | Type-II SCCmec | Protein | 4e-140 | 55 |
| SAR0071 | YP_039539.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 5e-140 | 55 |
| kdpB(SCCmec) | NP_370597.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 5e-140 | 55 |
| kdpB | NP_373310.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 5e-140 | 55 |
| kdpB | YP_190029.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 5e-140 | 55 |
| kdpB | YP_251949.1 | potassium-transporting ATPase subunit B | Not tested | SCCmec | Protein | 4e-141 | 55 |
