Gene Information

Name : troB (TPCCA_0164)
Accession : YP_004672910.1
Strain : Treponema paraluiscuniculi Cuniculi A
Genome accession: NC_015714
Putative virulence/resistance : Virulence
Product : iron (Fe2+)/zinc (Zn2+)/manganese (Mn2+) ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 184248 - 185048 bp
Length : 801 bp
Strand : +
Note : -

DNA sequence : 
ATGGCAGAGATATCAGCAACAGCTTATGCTGTCCAGGTTGACGACCTGACGCTTGCGTATCGGCAGAAGCCGGTGCTTTG
GGACGTGGATGTGCGTATTCCAGAGGGGGTTATCGAGGCCATTATCGGTCCTAATGGGGCGGGCAAGTCGACCCTATTGA
AGGCGATCATGGGTCTTCTGCCTCTCGCTTCCGGAGAGGTGCGAGTCTTTGGGCGTCCTTTTTCAAAAGAGCGGCGACGT
GTTGCGTATGTCCCGCAGCGCAGTGCAGTGGATTGGGATTTCCCTACTACCGTTTTTGATGTGGTGCTCATGGGTTCGTA
CGGTTCGCTCGGTTGGATTCGTCGTCCGGGAAAAAGAGAAAAGGCGCGTGCCCGGGAAGCGATCGAGGAAGTAGGAATGG
GCGCCTTTTTAGACCGACAAATCAGTGAGCTTTCAGGCGGTCAGCAGCAGCGCGTGTTTCTCGCGCGGGCCTTGGTGCAG
GACGCGGATCTTTACTTCATGGATGAGCCATTTCAAGGTGTGGATGCAGCTACTGAACAAGCAATCGTTACTCTTTTAAA
AACGCTGAAAGGGCGTGGGAAAACGTTGCTTGTTGTGCATCATGATTTGCAGACGGTGGCAGAGTATTTTGACCGCGTGC
TGCTTTTAAATGTTCGCGTCATCGCTGAAGGGGCCGTCGTGTCTGCCTTCACCGAAGAATACGTTCAAAGAGCCTATGGC
GGACGGATTAGTTCCACCCTTTTTCCGAGAGGAAATAAGGAGGATGTGCACGATGCACGCGCTCATGCGTCTGTTCTCTG
A

Protein sequence : 
MAEISATAYAVQVDDLTLAYRQKPVLWDVDVRIPEGVIEAIIGPNGAGKSTLLKAIMGLLPLASGEVRVFGRPFSKERRR
VAYVPQRSAVDWDFPTTVFDVVLMGSYGSLGWIRRPGKREKARAREAIEEVGMGAFLDRQISELSGGQQQRVFLARALVQ
DADLYFMDEPFQGVDAATEQAIVTLLKTLKGRGKTLLVVHHDLQTVAEYFDRVLLLNVRVIAEGAVVSAFTEEYVQRAYG
GRISSTLFPRGNKEDVHDARAHASVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 3e-38 46
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 4e-38 46
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 9e-42 42
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-42 42
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 7e-42 42
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-40 41
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-40 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
troB YP_004672910.1 iron (Fe2+)/zinc (Zn2+)/manganese (Mn2+) ABC transporter ATP-binding protein BAC0400 Protein 2e-105 99
troB YP_004672910.1 iron (Fe2+)/zinc (Zn2+)/manganese (Mn2+) ABC transporter ATP-binding protein BAC0440 Protein 3e-39 43
troB YP_004672910.1 iron (Fe2+)/zinc (Zn2+)/manganese (Mn2+) ABC transporter ATP-binding protein BAC0350 Protein 4e-42 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
troB YP_004672910.1 iron (Fe2+)/zinc (Zn2+)/manganese (Mn2+) ABC transporter ATP-binding protein VFG0526 Protein 4e-42 42