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Name : clpC (SNE_A04540) Accession : YP_004670822.1 Strain : Simkania negevensis Z Genome accession: NC_015713 Putative virulence/resistance : Virulence Product : putative ATP-dependent Clp protease ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 462520 - 465081 bp Length : 2562 bp Strand : - Note : - DNA sequence : ATGTTTGACAAATTCACCAACAGAGCTAAACAAGTCATTAAACTTGCTAAGAAAGAAGCTCAACGCCTCAACCACAATTA TTTGGGAACGGAGCACATCCTCCTTGGGCTGTTGAAACTTGGGCAAGGAATTGCCGTTAACGTCTTGCGTAACCTCAATG TCGATTACGATACCGTTTTAAGTGAAGTTGAGAGACTTGTTGGGTTTGGACCTGAAATCCAAGTCTACGGTGACCCTGCG CTAACAGGGAAAGTGAAAAAGGTCTTCGAATATGCGAACGAAGAAGCAGCCAGCCTCAACCACAACTACGTCGGAACTGA GCATCTCTTACTTGCCCTCTTGAGACAAACTGATGGAGTCGCGACTCAAATTCTCGAAAACTTGAGCATCAACTTAAAAG AGGTGCGCAAAGAAGTTCTTAAAGAACTCGAAACATTTAATTTGCAACTTCCGCCCATGGGAATGACTGGCTCCCAGTCA GCCGGGCGTCAAGAAAAGATGGCGGGTCCTAGTGGCACACCTGAAAAGATGCCAGCGCTACGCGCTTATGGTCACGATCT GACCGAATTGTGCCGCGAAGGAAAACTCGATCCTGTCATTGGCCGCTCGCAAGAAGTTGAACGGCTGATTCTTATCCTCT GCCGCCGCCGCAAAAACAATCCGGTTCTCATCGGAGAGGCGGGAGTCGGTAAAACAGCGATTGTTGAAGGACTTGCCCAA GCAATTGTCAAAGGTGAAGTCCCCGACCATCTAGCAAAGAAAAAACTCATCACACTCGATCTCACGCTCATGATCGCCGG AACCAAGTACCGAGGTCAATTCGAAGAGCGGATCAAAGCCGTCATGGACGAAGTGAAAAAGCATGGAAACATCCTGCTTT TCATCGATGAATTGCATACCATCGTCGGAGCAGGAGCTGCCGAAGGGGCAATTGATGCCTCAAACATCTTAAAACCTGCT CTATCACGTGGCGAAATCCAATGTATAGGAGCCACAACACTCGATGAATACCGCAAACACATTGAAAAAGATGCGGCACT TGAGCGCCGTTTCCAAAAGATTTCCGTTGCCCCTCCTTCTGTTGAAGAAGCTTCTCAGATCTTGATGGGACTGAAAACAA AATACGAAGAGCATCACAAATGTATCTATACAGATGAAGCGATACGGAGCGCCGTTTACCTTTCTGACCGCTACATCAAT GGCCGCTTCCTCCCAGATAAGGCCATCGACCTGATCGACGAAGCTGGAGCCAAAGCGCGGATCTCGATGCTCCACCAACC CCAAGAAGTCCACCAACTTGAAATCGAAATCGAAGAGCTTCGCAAAGCCAAAGAAGAATCAATTGGGAAGCAAGAGTATG AAAAAGCTGCAAAACTCCGCGACAAAGAGAAAAACCTCCGCGAAAAGCTGCAGCAAGTCCACACTGAGTGGGAAAAAATG AAAGATCAGCATCAAGTGGTTGTCGACGAAGACGATGTCGCTGCCATTGTGGCAAAGCACACAGGCATCCCCATGTCACG TATCACCGAAGGGGAAGCGGCAAAAGTGCTCAAAATGCAAGAGCTGCTAAAACAAAATATCATCGGTCAAAGCGACGCTG TCGAAGTCATTTGCCGGTCTCTCCGACGCAGTAAGGCAGACATTAAAGATCCCAATCGTCCGATTGGTGCCTTCCTTCTC CTCGGGCCAACTGGTGTGGGTAAAACTCTCCTTGCCAAGCAACTGGCGATCCATATGTTTGGAGGAGAAGATGCTCTTAT CCAAGTTGACATGTCCGAGTATATGGAGAAGTTTGCCGTCAGCCGTATGACAGGATCGCCTCCAGGATACGTAGGCCATG AAGAAGGGGGACAACTCACAGAGCAAGTGAGGCAGCGCCCTTACGCGGTCGTTCTCTTTGACGAAATTGAAAAAGCCCAT CCAGATGTGATGAACCTCCTCCTGCAAATTTTAGAAGACGGCCATCTTACCGATTCATTGGGTCGTAAAGTGAATTTCCG CAACACAATCATCTTGATGACGTCGAACCTCGGATCGGATCTCATCCGCCGCTCAACCGAAGTTGGCTTTGGTGCGATAG AAGGAATGCCCGACTACGACACGATGAAAGAAAAGATCGATAAAGCGGTCAAAAAGCACTACAAACCCGAATTCATCAAT CGCTTAGATGACACCATCATCTTCAAAGCTCTTGATAAGGAAAATCTCATCAAGATCATCGAGCTTGAAGTTGGTAAACT CAAAAAACGGCTCGAACGCAAAAATATCCAAATTATCCTCAGCGACAAAGCCAAAGAATACCTCGTCGACAAAGGATACC AACCTGAAATGGGCGCCAGAACCCTGCGCCGCACCATCGAGCAGCAGCTTGAAGATCCTCTTGCTGAAAAGTTGCTCATG GAAGGGGATGAGCCCCGTGAAATTTCTATCGAATTTGAAGAAGGCAAGTTGATTTTTAAAGATCAGGAGCTTTCTAAAGA TAAGAAGAAAAAAGAAAAGAAAAAGCTCATTGCAACAACAGCAACAAAAGATCAGGAAGAGCCTCAAGACGAAGGAAATT GA Protein sequence : MFDKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGIAVNVLRNLNVDYDTVLSEVERLVGFGPEIQVYGDPA LTGKVKKVFEYANEEAASLNHNYVGTEHLLLALLRQTDGVATQILENLSINLKEVRKEVLKELETFNLQLPPMGMTGSQS AGRQEKMAGPSGTPEKMPALRAYGHDLTELCREGKLDPVIGRSQEVERLILILCRRRKNNPVLIGEAGVGKTAIVEGLAQ AIVKGEVPDHLAKKKLITLDLTLMIAGTKYRGQFEERIKAVMDEVKKHGNILLFIDELHTIVGAGAAEGAIDASNILKPA LSRGEIQCIGATTLDEYRKHIEKDAALERRFQKISVAPPSVEEASQILMGLKTKYEEHHKCIYTDEAIRSAVYLSDRYIN GRFLPDKAIDLIDEAGAKARISMLHQPQEVHQLEIEIEELRKAKEESIGKQEYEKAAKLRDKEKNLREKLQQVHTEWEKM KDQHQVVVDEDDVAAIVAKHTGIPMSRITEGEAAKVLKMQELLKQNIIGQSDAVEVICRSLRRSKADIKDPNRPIGAFLL LGPTGVGKTLLAKQLAIHMFGGEDALIQVDMSEYMEKFAVSRMTGSPPGYVGHEEGGQLTEQVRQRPYAVVLFDEIEKAH PDVMNLLLQILEDGHLTDSLGRKVNFRNTIILMTSNLGSDLIRRSTEVGFGAIEGMPDYDTMKEKIDKAVKKHYKPEFIN RLDDTIIFKALDKENLIKIIELEVGKLKKRLERKNIQIILSDKAKEYLVDKGYQPEMGARTLRRTIEQQLEDPLAEKLLM EGDEPREISIEFEEGKLIFKDQELSKDKKKKEKKKLIATTATKDQEEPQDEGN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_004670822.1 | putative ATP-dependent Clp protease ATP-binding subunit | VFG0079 | Protein | 0.0 | 52 |
| clpC | YP_004670822.1 | putative ATP-dependent Clp protease ATP-binding subunit | VFG0080 | Protein | 1e-146 | 49 |
