Gene Information

Name : sctR (SNE_A02900)
Accession : YP_004670658.1
Strain : Simkania negevensis Z
Genome accession: NC_015713
Putative virulence/resistance : Virulence
Product : type III secretion integral inner membrane protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 292214 - 293080 bp
Length : 867 bp
Strand : -
Note : -

DNA sequence : 
ATGACACGAGCGAAAACACTCTATCGGACACCATTTCTTCTCTTCCTCTTGTTCTTTTCCTTCTTTGCGATGAGCCCTAC
TCTTTCTTATGCTCAAGAAGGGGGAGAAGCTAAGGCAACAATCAATCCACAACAAGAACAAACTCCAGAAGAGATGCAGC
AAGAGCAACTCGAAAATATTGGGGGCATGAGCCGATTTGGGGCTCCAAATGTCGTCACAATGCTTGCGGTCATTACCCTA
CTCGCTCTTCTTCCTTTTGCTATCCTTCTCCTAACTTCCTACACAAAAATTGTCATCGTTCTCTCTCTTGTTCGAAATGC
CTTAGGGGTGCAACAGGCACCTCCCAACCAAGTCTTAAACGGAATCGCACTCCTCATGACCATCTATGTCATGTTTCCAA
CGGGAGTGGCTATGTACAATGCTGGGAAAAACTACATTCAAAACGAAGCTCCCGCAAATCTCTTTACTGCTGACACCGCT
TCCTATCTTGTGAACGTCATAGACAAGTCCAAAGACCCCTTGCGCGACTTTCTCATCCGAAACATGTCGACTGCGCATCA
AAAAAACTTCTATCAGCTCGCCTACCGAAGCCTTCCAGCCGACTATCGAAATGAACTCTCTCCAAACGACTTTATCGTTT
TGATTCCAGCCTACATCACCTCGCAAATTAAAGGTGCTTTTGAAATTGGAGTTCTCATTTATCTTCCCTTCTTTGTGATT
GACCTGGTCACTTCGAACATTCTACTTGCTATGGGAATGATGATGCTTTCACCCTTAACAATCGCTCTCCCACTTAAACT
TCTTCTCATTGTAATGGTAGACGGTTGGACACTGATTATTCAAGGACTTGTACTAACCTATAAATAA

Protein sequence : 
MTRAKTLYRTPFLLFLLFFSFFAMSPTLSYAQEGGEAKATINPQQEQTPEEMQQEQLENIGGMSRFGAPNVVTMLAVITL
LALLPFAILLLTSYTKIVIVLSLVRNALGVQQAPPNQVLNGIALLMTIYVMFPTGVAMYNAGKNYIQNEAPANLFTADTA
SYLVNVIDKSKDPLRDFLIRNMSTAHQKNFYQLAYRSLPADYRNELSPNDFIVLIPAYITSQIKGAFEIGVLIYLPFFVI
DLVTSNILLAMGMMMLSPLTIALPLKLLLIVMVDGWTLIIQGLVLTYK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 9e-33 45
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 9e-33 45
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 6e-32 44
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 6e-32 44
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-32 44
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-32 43
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 4e-19 41
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 4e-19 41
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 1e-18 41
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 1e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sctR YP_004670658.1 type III secretion integral inner membrane protein VFG0551 Protein 2e-19 41