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Name : sctV (SNE_A17650) Accession : YP_004672133.1 Strain : Simkania negevensis Z Genome accession: NC_015713 Putative virulence/resistance : Virulence Product : type III secretion integral inner membrane protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 1837416 - 1839542 bp Length : 2127 bp Strand : + Note : - DNA sequence : ATGAAAGGCAGCCTTTTTGGCTTTCTCGGTAGCTCACGCGTTTTGAGTTTTTTTAATCGTTCTAGCGACGTCATTTTAGC CTTTTTTGTGATCGTCATCATTATGATGATTATCATCCCTGTTCCTCCTTCAGTTATCGATTGTTTCATTGCGTTCAACA TGAGCCTTTCGATTTCGCTTCTCATGGTTGCCCTCTACATCCAAAAAGCGGTACACCTCTCAATCTTCCCGTCAGTTCTT TTGATTACAACTCTTTTCCGCTTGGGGATTGAAATTGCTGCAACTCGGCAAATTCTCCTTAAAGCCGATGCAGGAGAGAT CATCCAAGCGTTTGGAGAATTTGTTGTTGGAGGAAACTTCATTGTTGGGGGTGTTATCTTCTTGATCATCACCATTGTCC AATTTATCGTCGTCACAAAAGGTGCTGAGCGTGTCGCTGAAGTTGCCGCTCGATTCACCTTGGATGCGATGCCTGGTAAA CAGATGAGTATCGATGCCGACATGCGCAGTGGAACAATTGATGCCAATCAAGCTCGAGAGCTTCGCTTAGCCCTCCAAAA AGAAAGCCAATTATACGGAGCGATGGACGGTGCCTTGAAATTCGTAAAAGGAGATGTCATTGCCGGTATTGTGATTGCTG TGATCAACATTGTCGGGGGGTTGATCATTGGTAACATGATTCACGGCATGACCATGCTTCAATCAGCCCAAGTTTATACT TTGCTCTCCATTGGTGAAGGTCTTGTTACTCAAATTCCTTCTCTTATGATCTCTCTTACAGCCGGTATTGTAACCACACG TGTTTCGAGTGAAAAGAAAGGAGGAAACCTCGGGAAAGACATCACTTCTCAGATCTTTTCTCATTCCAAAGGGCTCATCC TAGCCGGAATTGTTACCCTTGGAATGGCTTTTTTAAAAGGATTTCCATCTTTTCTCTTCCTTGCAGTTTGCGCAGTTTTG ATGTCGGTTGGAATCACTAACTGGGTGAAAGAAAAGAAAAAAGCCAAAAAAGCTGTCGCTGGCGCACTTGGAGCAGCCCA AGTTGAAACTGATGTTGAAGGCCACACTGTTGTACGCGGAGGGCTCGATGATTACGCCCTCACCCTCCCCGTGATTTTAG AAACAGGAAAAGACCTTTCATCGATTATCCGAAAGGAAAAAGGGGGGACTGCTTTTGTTGAAGAAATGATTCCCAAAATG CGTCATGCTCTTTACCAAGATTTAGGAATCCGTTTTCCAGGTGTCCATGTTCGAACAGAGTCCCCTTCACTAGATGCAAA TGAGTACTCCATTTATCTCAACGAAGTTCCGCTCGTCCGTGGAAAAATTCTTTCTGGAAGTGTCTTGACAAATGAAACTG AAGAAACGCTAAGACGGTACAATTTACCGTTCACTTCGTCGAAAAATGTTGTCGGACAAGCTTCCCTTTGGGTGGAAAAT AAATATGTCGAAGTCTTGAAAAAAGCAGGCATTAAATATTGGGAACCTCTCGATGTGATGATTCTTCACCTTTCCCAATT CTACAAGCAGTACGCTGCTGAGTTCATCGGAATTCAAGAAGTTCGCGCGATCTTAGAATTTGTGGAAAAATCGTTCCCCG ACCTCATCAAGGAAGTCACTCGCCTTGTCCCTCTTCAAAAGCTGACCGAAATCTTCAAACGACTCGTGCAAGAGCAAGTT TCTGTTAAGGACCTGCGCACCATTTTGGAAGCTTTAAGTGAGTGGGCTCAAACCGAAAAAGACACGGTCCTCTTAACCGA ATACGTTCGTTCTTCTCTCAAACGGTACATCAGTTACAAATACTCCCTTGGGCAAACTGTCTTGTCAGTCTACTTACTTG ACCCCGAAATTGAAGACATGGTTCGCGGTGCGATCAAGCAAACTTCTGCAGGATCCTATCTCGCGCTTGATCCCGATTCA GTCCAACTCATTTTACATGCCATGCGCGGTGTCATAGCTCCTACTCCTCCAGGAGGACAACCCCCAGTTCTTCTCACTGC TATCGATGTTCGACGCTTCGTACGCAAACTGATTGAAGGAGAGTTCCCAGATCTACCAACGGTATCCTATCAGGAAATTG TCCCTGAGATACGCATTCAACCTCTTGGCCGCATACAATTGTCATAA Protein sequence : MKGSLFGFLGSSRVLSFFNRSSDVILAFFVIVIIMMIIIPVPPSVIDCFIAFNMSLSISLLMVALYIQKAVHLSIFPSVL LITTLFRLGIEIAATRQILLKADAGEIIQAFGEFVVGGNFIVGGVIFLIITIVQFIVVTKGAERVAEVAARFTLDAMPGK QMSIDADMRSGTIDANQARELRLALQKESQLYGAMDGALKFVKGDVIAGIVIAVINIVGGLIIGNMIHGMTMLQSAQVYT LLSIGEGLVTQIPSLMISLTAGIVTTRVSSEKKGGNLGKDITSQIFSHSKGLILAGIVTLGMAFLKGFPSFLFLAVCAVL MSVGITNWVKEKKKAKKAVAGALGAAQVETDVEGHTVVRGGLDDYALTLPVILETGKDLSSIIRKEKGGTAFVEEMIPKM RHALYQDLGIRFPGVHVRTESPSLDANEYSIYLNEVPLVRGKILSGSVLTNETEETLRRYNLPFTSSKNVVGQASLWVEN KYVEVLKKAGIKYWEPLDVMILHLSQFYKQYAAEFIGIQEVRAILEFVEKSFPDLIKEVTRLVPLQKLTEIFKRLVQEQV SVKDLRTILEALSEWAQTEKDTVLLTEYVRSSLKRYISYKYSLGQTVLSVYLLDPEIEDMVRGAIKQTSAGSYLALDPDS VQLILHAMRGVIAPTPPGGQPPVLLTAIDVRRFVRKLIEGEFPDLPTVSYQEIVPEIRIQPLGRIQLS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-127 | 46 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 4e-95 | 41 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 4e-95 | 41 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 5e-93 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sctV | YP_004672133.1 | type III secretion integral inner membrane protein | VFG2126 | Protein | 0.0 | 66 |
| sctV | YP_004672133.1 | type III secretion integral inner membrane protein | VFG0064 | Protein | 5e-137 | 47 |
| sctV | YP_004672133.1 | type III secretion integral inner membrane protein | VFG0384 | Protein | 1e-129 | 47 |
| sctV | YP_004672133.1 | type III secretion integral inner membrane protein | VFG0198 | Protein | 2e-125 | 45 |
