Gene Information

Name : LILAB_35715 (LILAB_35715)
Accession : YP_004670102.1
Strain : Myxococcus fulvus HW-1
Genome accession: NC_015711
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 8781663 - 8782394 bp
Length : 732 bp
Strand : -
Note : COG4790 Type III secretory pathway, component EscR

DNA sequence : 
ATGAGCCGCGGCTTCGTGGGCGTGCTCGTGTTGGTGCCGGCCGTGGCCGCCGCGGCGGAGAGCTCGCTGGCTCGGATGTC
GTACGCAGGCAGCCCGTTGTCGATGATGGGCATGCTCGCGGTGATGTCGCTGCTGCCGTTCGCGGTGTTGATGCTGACGA
GCTTCTCGAAAATCGCCGTCGTGCTGTCGCTGGCCCGCTCGGCCATGGGCACGCAGCAGGCGCCGCCCACCATCGTGTTG
ACGGGGCTGGCGGCGGTGCTCACCGGCCACATCATGGCGCCGGTGATGGAGCGCATGTACGAAGCGGGGCAGGTGGCCTA
CACGCAGGTGGCGTCGGGCTCCGGCGCGGAGATGCTCTCCGCCGCGTCCCGCGTGTCGGAGCCGCTGCGGGCCTTCCTTG
TCAAACACGGGAGCCCCGAGGAGCGCGCGCGCTTCGTGGACCTGGCGCGTGAGCTGCGGCCGGTGGAGGAGCTGGAGTCG
GTGCGGGAGACGGACCTCTTCGTCGTCATCCCGGCCTTCGTCATCACCGAGCTGAAGGAGGCCTTCCAGATTGGCTTCCT
CGTCTTCCTCCCGTTCCTCGTGCTGGACATGGTGATTGCCAACGTGTTGCTCGCGCTGGGCATGCAGACGCTGTCACCCA
GCCAGGTGAGCCTGCCCTTCAAGATTCTCCTCTTCGTCGCCGTGGATGGCTGGTCGCTGCTCGCGCGGGGCCTCATCCTC
GGTTACCGGTGA

Protein sequence : 
MSRGFVGVLVLVPAVAAAAESSLARMSYAGSPLSMMGMLAVMSLLPFAVLMLTSFSKIAVVLSLARSAMGTQQAPPTIVL
TGLAAVLTGHIMAPVMERMYEAGQVAYTQVASGSGAEMLSAASRVSEPLRAFLVKHGSPEERARFVDLARELRPVEELES
VRETDLFVVIPAFVITELKEAFQIGFLVFLPFLVLDMVIANVLLALGMQTLSPSQVSLPFKILLFVAVDGWSLLARGLIL
GYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 9e-44 46
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-43 45
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 8e-35 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 8e-35 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 8e-35 45
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-44 45
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 8e-44 45
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-43 45
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-43 45
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-44 45
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 6e-35 44
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-43 44
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 5e-30 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 1e-30 42
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-35 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 5e-33 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-33 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 5e-33 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LILAB_35715 YP_004670102.1 type III secretion system protein VFG0044 Protein 7e-42 46
LILAB_35715 YP_004670102.1 type III secretion system protein VFG0394 Protein 6e-36 44
LILAB_35715 YP_004670102.1 type III secretion system protein VFG2338 Protein 2e-37 43
LILAB_35715 YP_004670102.1 type III secretion system protein VFG2494 Protein 2e-38 42
LILAB_35715 YP_004670102.1 type III secretion system protein VFG0519 Protein 2e-33 41