Gene Information

Name : LILAB_34650 (LILAB_34650)
Accession : YP_004669889.1
Strain : Myxococcus fulvus HW-1
Genome accession: NC_015711
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator HsfA
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 8527947 - 8529404 bp
Length : 1458 bp
Strand : -
Note : COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

DNA sequence : 
GTGAACCAAGTCAAGCGCGCCAAAGTCCTCGTCGTGGATGACGACTCCGTCGTCCTCAAGGCCGTGACGCAGATTCTCCA
GCGCGAGGGCCACCCGGTGGTGGCCATTGACGACGCGGTGGAGGGCCTGACGGCGGCGAAGGACCCCACCATCGACGTGG
TCGTCCTCGACATCAAGATGCCCAACCTGTCCGGCATGGACCTGCTGCGCGGCATCAAGGCGGACCGCCCGGACGTGGAG
GTCATCATGATGACGGCCTTCGCCACCGTGGAGACGGCGGTGGAGGCGGTGAAGGCGGGCGCGTACGACTACCTCACCAA
GCCCTTCGAGAACATCGACGAGGTCAGCCTCACGGTGGCCAAGGCGGCCGAGCGCAAGGCGCTCAAGGACCGCACCCGCG
CGCTGGAGGAGGCCCTCACGGTCCGCAGCCAGTTCGAGGACCTCATCGGCCAGTCCACGCAGATGCGCTCCGTCTTCAAG
CTGGTGGAGACGGTGAGCCACTCCACCGCCACGGTGCTCATCCAGGGTGAGAGCGGCACGGGCAAGGAGCTGGTGGCCCG
CGCCATCCACTACCGCAGCGCGCGCAAGGACAAGCCCTTCGTGGCGGTCAACTGTTCGGCGCTGACGGAGACGCTGCTGG
AGAGCGAGCTCTTCGGCCACGTGAAGGGCAGCTTCACCGGCGCCACCGGCAACAAGAAGGGCCTCTTCGAGGCGGCCGAC
GGCGGCACCATCTTCCTGGACGAGATTGGCGACGTGCCCCCGGCCACCCAGGTCCGCCTGCTGCGCGTGCTCCAGGAAGG
CGAGGTCAAGCGCGTGGGCGCCAACGAGCCAGTGAAGGTGGACGTGCGCGTCATCGCCGCCACCCACGTGGACCTGTCCC
GCGCCAAGGAGCAGGGCAAGTTCCGCGAGGACCTCTTCTACCGGCTCAACGTCATCACCATCGACCTGCCGCCGCTGCGC
GACCGGCCGGAGGACGTGCCGCTGCTGGCGCACCACTTCCTGAAGCTGTACGCGTCCAAGGCGGACAAGAAGGTGACGGG
CATCTCCCCGCGCGCCATGGAGGCCCTCACCTGCAACCGGTGGACGGGCAACGTGCGCGAGCTGGAGAACGTCATCGAGC
GCGCGGTGGTGCTGACGGGCAACGACGTCATCGACGTGGAGGACCTGCCGCCGGGCTTCCAGTCCGCGCCGCAGCCGGAC
TCCACGGTGGAGGTGTTCAGCCTGGCACACCTGCCGTACGCCCAGGCCAAGCGCCTGGCGATGCGCGCCTTCGAGCGCCG
CTACCTGTCCGCCCTCCTGGAGAAGAACAACCAGAACGTCTCCAGCGCGGCGCGCGCGGCGGGCGTGGACCGCTCCAACT
TCCGCCGTCTGCTCAAGCAGTACGAGGTGGCCGGCCGGTCCATGAAGCCCCGCGTGGCGCAGGCGGAAGACGCGGAGGCG
ATGGAAGCCGCGTCCTGA

Protein sequence : 
MNQVKRAKVLVVDDDSVVLKAVTQILQREGHPVVAIDDAVEGLTAAKDPTIDVVVLDIKMPNLSGMDLLRGIKADRPDVE
VIMMTAFATVETAVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRALEEALTVRSQFEDLIGQSTQMRSVFK
LVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKPFVAVNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAAD
GGTIFLDEIGDVPPATQVRLLRVLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPLR
DRPEDVPLLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERAVVLTGNDVIDVEDLPPGFQSAPQPD
STVEVFSLAHLPYAQAKRLAMRAFERRYLSALLEKNNQNVSSAARAAGVDRSNFRRLLKQYEVAGRSMKPRVAQAEDAEA
MEAAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-49 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-49 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LILAB_34650 YP_004669889.1 DNA-binding response regulator HsfA BAC0467 Protein 5e-72 50
LILAB_34650 YP_004669889.1 DNA-binding response regulator HsfA BAC0089 Protein 4e-89 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LILAB_34650 YP_004669889.1 DNA-binding response regulator HsfA VFG1214 Protein 5e-59 44
LILAB_34650 YP_004669889.1 DNA-binding response regulator HsfA VFG1249 Protein 1e-57 43
LILAB_34650 YP_004669889.1 DNA-binding response regulator HsfA VFG0116 Protein 8e-56 41