Gene Information

Name : LILAB_20255 (LILAB_20255)
Accession : YP_004667029.1
Strain : Myxococcus fulvus HW-1
Genome accession: NC_015711
Putative virulence/resistance : Virulence
Product : sigma-54 dependent DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 4776834 - 4778240 bp
Length : 1407 bp
Strand : -
Note : COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

DNA sequence : 
ATGACATCCCCCACGGTCCTGGTCGTCGACGACGACCGCGCGAACCTCGACTCGGTCATCCGCATCTTCCAGCGGGAGGG
CATGGCCACGCTGGCCGCCGGCAACGGCACGGAGGCGCTGGAGCTGCTGCGCCGGCCGGAGGTCGCCGCCATGGTGACCG
ACCTGATGATGCCCAACATGGACGGCCAGGAGCTGCTGCGCGCCGCGCGCGCCATCCGGCCGGACGTGGAGGTGGTGCTG
ATGACGGCCTACGGCACGGTGGAGACGGCCGTGGCGGCCATGAAGGACGGCGCCTACGACTTCATCACCAAGCCCCTCAA
GCGCCACGCGCTGGTGAAGGCCATCCAGAAGGCGCTGGAGAAGCGCGCGCTGGTGGCGGAGAACCAGTCCCTCAAGGCGA
AGCTGGCGGAGATGAACGCCGCGGGCGGGCGCTCCATGGTGGGCCAGTCCCCCGCCTTCCGCGCCATGCTGGACACCATC
CGCCAGGCGGCGCCCTCCACCGCCACGGTGCTGCTGCTGGGGGAGTCCGGCACGGGCAAGGAGCTGGCCGCGCGCTCCGT
GCACGAGTTCTCCCAGCGGGTCCGCGGGCCCTTCGTCGCCGTCAACTGCGGCGCGCTGCCGGAGAACATCCTGGAGGCGG
AGCTCTTCGGCGTGGAGCGCGGCGCCTTCACCGGCGCGGTGGCCCGGCGCGAGGGCCGCTTCGAGCGCGCCCACGGCGGC
ACCCTCTTCCTGGACGAGGTCGGAGAGATGCCGCTGCCCGCGCAGGTGAAGCTGCTCCGCGCACTGGCCGAGGGTGAAAT
CGAGCGGCTGGGCGGCACGCAGACGGTGAAGGTGGACGTGCGCCTCGTCGCCGCCACCAACAAGGACCTGCAGAAGGAGG
TGGCCGAGGGCCGCTTCCGCGAGGACCTCTACTACCGGCTCAACGTGGTGGAGATCCGCGTGCCCGCGCTCGCCTCGCGC
CGCGAGGACATCCCCCTGCTGGCGGACGCCTTCCTGCGCCGCTTCGCCGCCAAGAATGGCAAGGTGCTGCGCGGCTTCTC
CCAGGAGGCGCTGGGCGTGCTGGAGAACTACGCCTGGCCCGGCAACGTGCGCGAATTGGAGCACGCGGTGGAGCGCGCGG
TGGTGCTGGCGCGCGGCGAGGTGCTGGAGGCCAGCGACCTGCCCGAGTCCGTGCGCAAGGGCCCGCTGGGCTCGGCCGGA
CAGCTCGTCATCCCCATTGGCACCCCCATGGAGGAGATTGAGCGCCGGGTGATCCACGAGACCTTGCGCCACACCCGGGG
CGACAAGACGCTGGCCGCCCGGCTCCTGGGCATCGCGGCGCGGACCATCTACCGCAAGCTGGAGCGCGAGCAGTCCACCG
GGGAGGCCCCCGCCGCCACGCCGCCCGACTCCGACACCGCCGACTGA

Protein sequence : 
MTSPTVLVVDDDRANLDSVIRIFQREGMATLAAGNGTEALELLRRPEVAAMVTDLMMPNMDGQELLRAARAIRPDVEVVL
MTAYGTVETAVAAMKDGAYDFITKPLKRHALVKAIQKALEKRALVAENQSLKAKLAEMNAAGGRSMVGQSPAFRAMLDTI
RQAAPSTATVLLLGESGTGKELAARSVHEFSQRVRGPFVAVNCGALPENILEAELFGVERGAFTGAVARREGRFERAHGG
TLFLDEVGEMPLPAQVKLLRALAEGEIERLGGTQTVKVDVRLVAATNKDLQKEVAEGRFREDLYYRLNVVEIRVPALASR
REDIPLLADAFLRRFAAKNGKVLRGFSQEALGVLENYAWPGNVRELEHAVERAVVLARGEVLEASDLPESVRKGPLGSAG
QLVIPIGTPMEEIERRVIHETLRHTRGDKTLAARLLGIAARTIYRKLEREQSTGEAPAATPPDSDTAD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
norR ABD94719.1 putative nitric oxide reductase transcriptional regulator Not tested ExoU island B Protein 7e-54 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LILAB_20255 YP_004667029.1 sigma-54 dependent DNA-binding response regulator BAC0467 Protein 6e-87 49
LILAB_20255 YP_004667029.1 sigma-54 dependent DNA-binding response regulator BAC0089 Protein 5e-76 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LILAB_20255 YP_004667029.1 sigma-54 dependent DNA-binding response regulator VFG1214 Protein 1e-69 43
LILAB_20255 YP_004667029.1 sigma-54 dependent DNA-binding response regulator VFG0116 Protein 3e-61 41