Gene Information

Name : LILAB_19930 (LILAB_19930)
Accession : YP_004666966.1
Strain : Myxococcus fulvus HW-1
Genome accession: NC_015711
Putative virulence/resistance : Virulence
Product : FliQ/MopD/SpaQ family protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1987
EC number : -
Position : 4708037 - 4708300 bp
Length : 264 bp
Strand : +
Note : COG1987 Flagellar biosynthesis pathway, component FliQ

DNA sequence :
ATGAATCAGCTCACGTTCATCACCCAGGAGGCCCTGTTCCTGGTGCTCGTCGCGTCGGCGCCGCCGGTGCTGATGAGCCT
GTTGGTGGGGTTCATCATCTCCCTGTTCCAGGCCACCACGCAGATCCAGGAGCAGACGCTGACCTTCGCGCCGAAGGTCG
TCGCCGTGTTCGGCATCCTCGCGTTGGCCGGGCCCTGGATTGGCAGCCAGCTGGTGCGCTTCACGTTCCACGTCTTCGAC
AGGTTCCCCGCGCTCATCAAATGA

Protein sequence :
MNQLTFITQEALFLVLVASAPPVLMSLLVGFIISLFQATTQIQEQTLTFAPKVVAVFGILALAGPWIGSQLVRFTFHVFD
RFPALIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscS AAO18039.1 LscS Virulence TTSS locus Protein 3e-09 49
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 5e-11 48
hrcS AAT96201.1 HrcS Virulence T-PAI Protein 1e-10 48
hrcS AAG33885.1 HrcS Virulence Hrp PAI Protein 9e-11 48
hrcS NP_791221.1 type III secretion protein HrcS Virulence Hrp PAI Protein 1e-10 48
hrcS AAT96147.1 HrcS Virulence T-PAI Protein 1e-10 48
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 6e-11 47
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 6e-11 47
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 6e-11 47
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 3e-11 47
hrcS ABQ88360.1 HrcS Virulence Hrp PAI Protein 1e-07 46
hrpO AAB05076.1 HrpO Virulence Hrp PAI Protein 1e-07 46
ysaS AAS66847.1 YsaS Not tested SSR-1 Protein 2e-11 44
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 8e-04 44
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 8e-04 44
spaQ AAS66866.1 SpaQ Not tested SSR-2 Protein 1e-10 43
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 6e-04 42
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 0.001 42
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 0.001 42
escS AFO66341.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-09 42
escS AFO66401.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-09 42
escS YP_003223489.1 T3SS structure protein EscS Virulence LEE Protein 1e-09 42
escS YP_003232139.1 T3SS structure protein EscS Virulence LEE Protein 1e-09 42
escS AAK26701.1 EscS Virulence LEE Protein 9e-10 42
escS AAL57528.1 EscS Virulence LEE Protein 9e-10 42
escS CAC81848.1 EscS protein Virulence LEE II Protein 9e-10 42
escS CAI43888.1 EscS protein Virulence LEE Protein 2e-09 41
unnamed AAL06355.1 EscS Virulence LEE Protein 7e-10 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LILAB_19930 YP_004666966.1 FliQ/MopD/SpaQ family protein VFG0187 Protein 2e-07 53
LILAB_19930 YP_004666966.1 FliQ/MopD/SpaQ family protein VFG0395 Protein 2e-09 52
LILAB_19930 YP_004666966.1 FliQ/MopD/SpaQ family protein VFG0043 Protein 7e-12 50
LILAB_19930 YP_004666966.1 FliQ/MopD/SpaQ family protein VFG2132 Protein 3e-14 48
LILAB_19930 YP_004666966.1 FliQ/MopD/SpaQ family protein VFG2454 Protein 6e-10 44
LILAB_19930 YP_004666966.1 FliQ/MopD/SpaQ family protein VFG0520 Protein 3e-04 42
LILAB_19930 YP_004666966.1 FliQ/MopD/SpaQ family protein VFG1260 Protein 1e-09 42