|
Name : Runsl_4460 (Runsl_4460) Accession : YP_004657917.1 Strain : Runella slithyformis DSM 19594 Genome accession: NC_015703 Putative virulence/resistance : Virulence Product : Restriction endonuclease, type I, EcoRI, R subunit/type III Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 5151124 - 5154162 bp Length : 3039 bp Strand : - Note : PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: sli:Slin_6960 transcr DNA sequence : ATGCCCAGCCAAACCAACGAACAAGCCTTAGAATCGGCCATTGAAAAACGCCTCACGGGCACCTGTCTGGAAGACCTCAA TACCAACGGTGCAGTTGGCAACGTAGCCGAGCGGGCCGAGCTGTATCGTGCCGGCAACGGGTACTATCTTGGTACCCCGC AGGACTTCAACGCCCAATACGCCGTGGATGAGCGTCGGCTGTGGCATTTTCTGGAAACCACCCAAAAAGAAGAACTCGCC AAACTCCAAAAAAACGCCGACTGGAAACTCAAGATACTGGAGCGCATTGACCGCATGGTGAAGAAATACGGCATTTTGCG CCTTCTACGTAAAGGGCTGGAAGTGGAAGATGCGCATTTTACCATGCTCTATTCGCTGCCGTTGGCTTCCAGCAGTCAAG CCGTCAAAGATAATTTTGAAAGCAATGAGTTCAGCGTCACGCGCCAAATACGGTATTCGCTCACCAATCCCCGCGAAGAG ATCGACATGGTGCTGTTTGTGAATGGGTTACCGCTCGTCACGATGGAGCTCAAAAACCAATGGACGGGCCAAAATGCCAA AGTACACGGCCAAAACCAATACCGAAACGACCGCGACACCACCCAACCGCTGTTGCATTTCGGACGCTGCATTGTCCATT TCGCCGTTGACCCCGACGAAGCCTACATGACCACCAAACTCAATGGCAAAGACACGTTCTTTTTACCCTTCAACTTGGGC CACAACTACGGCAAAGGCAACCCGCCCAATCCTTTTGGTCACAAAACCGCCTATCTGTGGGAGGTCTTCACGCGCCAAAG CTTAACCAATATCATTCAGCATTTTGTCCGTTTTGACGGCAAAGACACCGATACGTTGGCCAAGAGAAACCTGTTTTTTC CGCGTTATCATCAACTCGACGTGGTGCGCAAGCTCATTCAGGATGCGAGCAAAAAAGGCGTCGGCCAAACCTATTTGATT CAGCATTCGGCCGGTTCGGGCAAATCCAACTCCATCACGTGGGCGGCGTATCAGCTCATCGAAACTTACCCCGAAAACGA CACCGTTCCCGGCAGTCGGGGAATCACCCACCCGCTCTTTGATTCCGTCATCGTCGTCACCGACCGCCGACTGCTCGACA AGCAGTTGCGCGAGAACATCAGCGATTTTTCGGAAGTAAAAAATATAGTAGCCCCCGCCCATTCGTCCAAAGAGCTCAAA GAGAGTTTGGAAAGCGGTAAGCGCATCATCATTACCACCATTCAGAAGTTCCCGTTTATTGTGGACGGCATTGCCGACAT GAGCCACAAACGCTTTGCGGTCATCATCGACGAAGCCCACAGCAGCCAAAGCGGCTCCACCGCCGACAACATGAACCGTG TCATGGGCAAGAAAGCTGAAGAGGAGGAAGAAGAAGACCCGGAAGATATTATTTTGAAAGCGATGAAAACCCGCAAAATG CGCGGCAATGCGTCGTATTTAGCCTTTACGGCCACGCCCAAGAATGCCACACTGGAGAAATTCGGCATCAGGCAGGAAGA CGGGAAGTTTAAGCCTTTTCACGAATACACCATGAAGCAGGCCATTGAAGAGGGCTTTATTCTGGACGTGTTGGCCAACT ACACCACCTACAAAAGCTATTACGAAATTGAAAAATCCATTGAAGACAATCCGCTCTTTGATACGGCCAAAGCCCAAAAG AAACTGAAAGCTTACGTAGAGCGGGACGCCCGGACCATTGCTACCAAAGCCGACATCCTACTCGATCACTTCATTACCAA AGTGGTCAACCCCAAAAAGCTGAAGGGCAAAGCCAAGGCAATGGTGGTCACGCAGAGCATCGAATCGGCTATTCGGTATT TCTTTGCGTTACGGCAATTGCTCAACGAGAAAGGCAACCCCTTCAACATTGTTATTGCATTTTCGGGCAAGAAAACCGTG GACGGCATCGAATACACCGAAGAAAGCATCAATGGTTTTGCCGAAAAAGACACCCGTGACAAATTTGACCAAGACGACTA CCGGATGTTGGTGGTAGCCAACAAATACCTGACGGGTTTTGACCAACCCAAACTCACCGCCATGTACGTGGACAAGAAGT TACAGGACGTTTTAGCCGTTCAGGCACTTTCCCGTTTAAACCGTTCGGCCGATAAATTGGGTAAGAAAACGGAAGATTTG TTTGTGCTGGATTTCTTCAATTCAACCGACGATATTAAGGTCGCATTCGACCCGTTCTACACGGCCACCACGCTCAGCAA AGCCACCGATGTCAACGTATTGCACGATTTAAAAGGCCATCTGGACGATGTTGGCGTATATGAATGGGCAGAGGTAGAAG ATTTTGTGGCCAAGTATTTTAAAGGCGTCAACGCCGAGCAACTAAGCCCCATCATTGACCTCGCCGCCGACCGTTTTAAC CAACAACTGGAATTGGAAGATGCCCAAAAAGCGGATTATAAAATCAAGGCCAAGCAGTTTGTGAAGATTTACGCCCAAAT GGCTTCCATTCTGCCGTATGAAATCATCAAATGGGAAAAGCTGTTTTGGTTTTTGAAATTCCTCATTCCCAAACTCATCA TCGTTGATGCCGGTTCGGAAGCCTTGGATGAATTGCTAAATTCCGTTGACCTTTCCACCTACGGATTGGAGCGGGTAAAA CTCAATACCGCCATTGGTCTTGATGCTTCAGAAACAGAATTGGAGCCGCAAAACTCCAACGTGAGAGGTGTTCACGGAGA CACTACTCAGGAAGACCCGCTGGATCTAATCATCAGGAGTTTTAACGAACGATGGTTTCAGGGTTGGGATTTAACGCCCG AAGAACAACGGGTAAAGTTTGTCACCCTGGCGCAAAGTATTCAGGCGCACCCTGATTTCAAAAACAAGTATTCCGAGAAT CAGGACTCCCAAAACCGAGAAATTGCGTTCCGGAAAATTTTTGACGAAGTAATGGCCAAGCAACGCAAATCCGAGCTCGA CCTGTATCGGCTTATCTCCAAAGACGATGCCTTCAAAACTGCCATGCAGGATACGTTAAAAAGGATGATACGCCCCTAA Protein sequence : MPSQTNEQALESAIEKRLTGTCLEDLNTNGAVGNVAERAELYRAGNGYYLGTPQDFNAQYAVDERRLWHFLETTQKEELA KLQKNADWKLKILERIDRMVKKYGILRLLRKGLEVEDAHFTMLYSLPLASSSQAVKDNFESNEFSVTRQIRYSLTNPREE IDMVLFVNGLPLVTMELKNQWTGQNAKVHGQNQYRNDRDTTQPLLHFGRCIVHFAVDPDEAYMTTKLNGKDTFFLPFNLG HNYGKGNPPNPFGHKTAYLWEVFTRQSLTNIIQHFVRFDGKDTDTLAKRNLFFPRYHQLDVVRKLIQDASKKGVGQTYLI QHSAGSGKSNSITWAAYQLIETYPENDTVPGSRGITHPLFDSVIVVTDRRLLDKQLRENISDFSEVKNIVAPAHSSKELK ESLESGKRIIITTIQKFPFIVDGIADMSHKRFAVIIDEAHSSQSGSTADNMNRVMGKKAEEEEEEDPEDIILKAMKTRKM RGNASYLAFTATPKNATLEKFGIRQEDGKFKPFHEYTMKQAIEEGFILDVLANYTTYKSYYEIEKSIEDNPLFDTAKAQK KLKAYVERDARTIATKADILLDHFITKVVNPKKLKGKAKAMVVTQSIESAIRYFFALRQLLNEKGNPFNIVIAFSGKKTV DGIEYTEESINGFAEKDTRDKFDQDDYRMLVVANKYLTGFDQPKLTAMYVDKKLQDVLAVQALSRLNRSADKLGKKTEDL FVLDFFNSTDDIKVAFDPFYTATTLSKATDVNVLHDLKGHLDDVGVYEWAEVEDFVAKYFKGVNAEQLSPIIDLAADRFN QQLELEDAQKADYKIKAKQFVKIYAQMASILPYEIIKWEKLFWFLKFLIPKLIIVDAGSEALDELLNSVDLSTYGLERVK LNTAIGLDASETELEPQNSNVRGVHGDTTQEDPLDLIIRSFNERWFQGWDLTPEEQRVKFVTLAQSIQAHPDFKNKYSEN QDSQNREIAFRKIFDEVMAKQRKSELDLYRLISKDDAFKTAMQDTLKRMIRP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VPI2_0013c | ACA01830.1 | type I restriction enzyme HsdR | Not tested | VPI-2 | Protein | 0.0 | 67 |
| VC1765 | NP_231400.1 | type I restriction enzyme HsdR | Not tested | VPI-2 | Protein | 0.0 | 67 |
| VC0395_A1363 | YP_001217306.1 | type I restriction enzyme HsdR | Not tested | VPI-2 | Protein | 0.0 | 67 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Runsl_4460 | YP_004657917.1 | Restriction endonuclease, type I, EcoRI, R subunit/type III | VFG1098 | Protein | 0.0 | 67 |
