Gene Information

Name : Runsl_3699 (Runsl_3699)
Accession : YP_004657189.1
Strain : Runella slithyformis DSM 19594
Genome accession: NC_015703
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4293786 - 4294475 bp
Length : 690 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_0731 histidine kinase; PFAM: ATP-binding region, ATPase-li

DNA sequence : 
ATGGATTTTATTCCTCATTTATTATTGGTCGAAGACGAAATAAAAGTTGCGGCATTTATTAAAAAAGGGCTTGAAAGACA
GGGGTTTACGGTAGATATTGCCGAGGAGGGGCTGAAAGGGAAGCAACTTTTTGAAGAAAGAACGTATGATCTCATTATTT
TGGATGTAAACCTGCCCAACATGGATGGGGTGACGTTGGCGGCGCATGTTCGCACTCAAAATACCCAAATACCGGTCTTA
ATGCTTACGGCATTGGATACCACCGCCGACAAACTGGCAGGCTTTGATGCGGGAGTGGATGATTATTTGGTTAAACCCTT
TGATTTTATGGAGTTGGTAGCCCGCCTGAAAGCCTTGCTAAAACGTGCGGTAAAATCTGCTGAGCCAACAAACATACTCC
GGGTCGCAGACCTTGAATTGGACCTGGACCAAAAATTGGCCCGACGCAATGGCCAAACCATCGAATTGACCGCCAAGGAA
TTTGCGCTGTTGGAATACCTTATGCGCAATCGCGGGCGGGTGGTGTCAAAAGTAGACATAGCCGAAAAAGTGTGGGACAT
TGACTTTGATACGGGAACCAATTTCATTGAGGTATATATCAATTATTTACGTAAAAAAATAGAAAAAGATACATCCAATA
AACTCATTCATACCGTAGTGGGGATGGGGTATACGCTTAAAGAAAAATGA

Protein sequence : 
MDFIPHLLLVEDEIKVAAFIKKGLERQGFTVDIAEEGLKGKQLFEERTYDLIILDVNLPNMDGVTLAAHVRTQNTQIPVL
MLTALDTTADKLAGFDAGVDDYLVKPFDFMELVARLKALLKRAVKSAEPTNILRVADLELDLDQKLARRNGQTIELTAKE
FALLEYLMRNRGRVVSKVDIAEKVWDIDFDTGTNFIEVYINYLRKKIEKDTSNKLIHTVVGMGYTLKEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-31 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Runsl_3699 YP_004657189.1 winged helix family two component transcriptional regulator BAC0125 Protein 2e-42 49
Runsl_3699 YP_004657189.1 winged helix family two component transcriptional regulator BAC0197 Protein 5e-40 48
Runsl_3699 YP_004657189.1 winged helix family two component transcriptional regulator BAC0083 Protein 4e-36 47
Runsl_3699 YP_004657189.1 winged helix family two component transcriptional regulator BAC0638 Protein 6e-30 47
Runsl_3699 YP_004657189.1 winged helix family two component transcriptional regulator BAC0111 Protein 2e-39 46
Runsl_3699 YP_004657189.1 winged helix family two component transcriptional regulator BAC0347 Protein 7e-35 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Runsl_3699 YP_004657189.1 winged helix family two component transcriptional regulator VFG0596 Protein 2e-31 42
Runsl_3699 YP_004657189.1 winged helix family two component transcriptional regulator VFG1386 Protein 7e-30 41