Gene Information

Name : Runsl_3559 (Runsl_3559)
Accession : YP_004657052.1
Strain : Runella slithyformis DSM 19594
Genome accession: NC_015703
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4136467 - 4137159 bp
Length : 693 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: fba:FIC_01253 UspA; PFAM: UspA; SPTR: UspA

DNA sequence :

ATGGAGGCTTGCCCCAAAATACTTTTTGTCGAAGATGACAAACGAATCTCTGACGCTACAAAGAAAGGCCTGCAAAAGCA
AGGTTTTGAGGTAGAGCCGGCCTATGACGGCTTTGTGGGTGCCCGTCTTGCCACGACCCATGCGTATGACCTTATTTTAT
TGGATATCAACCTTCCGCTCATGAATGGCTTTGAAGTTTGTAAGGCCATTCGGCAGCACGGTGTCACTACGCCCATTCTC
ATGCTTACGGCACTGGGAGAAATCGACGACCGCGTCAAAGGGCTTGATTACGGGGCCGATGACTATCTGGTCAAACCCTT
TGATTATCGGGAATTATTAGCCCGTGTTCATGCATTGCTTCGGCGGGCCAATCCCACCCACGACCAAGCCTCGGAAGTAC
TTCGCGAGGCCAACCTGGAAATGAACCTTATCAGCAAAACCGTCAGAAGAGACAATCAGCTTATTGACCTGACGGCCCGC
GAATACGAACTGCTCGAATTCCTGTTACGAAATAAAGGCCGTGTCCTGTCAAAGATGGACATCATTGAGCACGTATGGGA
GTTAAACTTTGACACAAACACCAACGTGATAGAGGTATATATCAATTACTTACGCAAAAAAATAGACCGTAATTTTGAGC
CCAAACTGATCCATACCAAGACCGGTCTGGGGTACTACCTCAAAGCTGATTAG

Protein sequence :

MEACPKILFVEDDKRISDATKKGLQKQGFEVEPAYDGFVGARLATTHAYDLILLDINLPLMNGFEVCKAIRQHGVTTPIL
MLTALGEIDDRVKGLDYGADDYLVKPFDYRELLARVHALLRRANPTHDQASEVLREANLEMNLISKTVRRDNQLIDLTAR
EYELLEFLLRNKGRVLSKMDIIEHVWELNFDTNTNVIEVYINYLRKKIDRNFEPKLIHTKTGLGYYLKAD

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
copR	NP_460069.2	transcriptional regulatory protein YedW	Not tested	SPI-5	Protein	5e-32	42
copR	AAC33719.1	regulatory protein CopR	Not tested	SPI-5	Protein	2e-31	42

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Runsl_3559	YP_004657052.1	winged helix family two component transcriptional regulator	BAC0111	Protein	7e-43	50
Runsl_3559	YP_004657052.1	winged helix family two component transcriptional regulator	BAC0083	Protein	7e-39	47
Runsl_3559	YP_004657052.1	winged helix family two component transcriptional regulator	BAC0347	Protein	3e-37	47
Runsl_3559	YP_004657052.1	winged helix family two component transcriptional regulator	BAC0638	Protein	3e-32	47
Runsl_3559	YP_004657052.1	winged helix family two component transcriptional regulator	BAC0125	Protein	2e-41	45
Runsl_3559	YP_004657052.1	winged helix family two component transcriptional regulator	BAC0197	Protein	3e-39	45
Runsl_3559	YP_004657052.1	winged helix family two component transcriptional regulator	HE999704.1.gene1528.	Protein	2e-32	44
Runsl_3559	YP_004657052.1	winged helix family two component transcriptional regulator	BAC0308	Protein	1e-37	44

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Runsl_3559	YP_004657052.1	winged helix family two component transcriptional regulator	VFG1389	Protein	5e-34	44
Runsl_3559	YP_004657052.1	winged helix family two component transcriptional regulator	VFG1390	Protein	2e-38	43
Runsl_3559	YP_004657052.1	winged helix family two component transcriptional regulator	VFG0596	Protein	2e-32	42