Gene Information

Name : Runsl_3159 (Runsl_3159)
Accession : YP_004656672.1
Strain : Runella slithyformis DSM 19594
Genome accession: NC_015703
Putative virulence/resistance : Resistance
Product : beta-lactamase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG2367
EC number : -
Position : 3691257 - 3692168 bp
Length : 912 bp
Strand : -
Note : PFAM: Beta-lactamase; KEGG: dfe:Dfer_4669 hypothetical protein; SPTR: uncharacterized protein

DNA sequence : 
ATGTACACCATCAAAACCATTCCACTGAAAACCCGGTTTCTTACGCTTTTTATCAGCCTGACTTCGTATTGTACATTTGG
TCAAATCGAGTCTTTGAAACAAAAAATCAGGCAAATCGTTTCGGCCACCGACGGCACTTTAGGCATTGGTATTTCGGGAT
TGAATAATCGTGATACGCTTACGCTCAATAATCACGTTCATTTTGCCATGCAGAGTGTGTATAAATTTCATTTGGGGCTG
GCCATCCTGAATCAGGTCGATCAGGGAAAATTGAAGCTGAACCAGAAGATACTTATTCTAAAGAAGGACCTGCTGCCTGA
TACTTGGAGCCCGTTGCGTGAAAAATACCCCAATGGAAACGTAGAGATTCCACTCAGTGAATTGCTCCAATTTACGGTGG
CGCAAAGTGACAACAACGGGTGCGATATTTTATTCAGGATCATGGGCGGCCCCCGAGTAGTCGATAATTACATCAAAAGC
ATCGGTATGACCGACGTAGCCATCATGACCACGGAAGAACAAATGCACAAAGATGTCAAGGCCCAATTTTCCAATTGGAC
AACTCCCTGGTCAGCCGTACAATTATTGGAGAAGTTTTATCAAAAGAAAATTCTTTCTCCTGCAAGTCATGCTTTTATGT
GGCAAACGTTAACAGGAGCCACTACCGGTGCTCAGAAAATCAAAGGGCTGTTACCTGCGGGCACCATCGTGGCGCATAAG
TCGGGGCTTTCGGGGGTCAACAGCGAGGGCATTACTGCCGCTACCAACGACATCGGTATCGTGACACTACCCAATGGTAA
ACACTTTATTATCAGCACTTTCTATTCCAATACAAAAAAGAGCGATAAAGAAAGCGACCGAGTCATTGCTGAAGTGGCCA
AAGCGGCTTTTGATTATTTCTCATCGAAATAG

Protein sequence : 
MYTIKTIPLKTRFLTLFISLTSYCTFGQIESLKQKIRQIVSATDGTLGIGISGLNNRDTLTLNNHVHFAMQSVYKFHLGL
AILNQVDQGKLKLNQKILILKKDLLPDTWSPLREKYPNGNVEIPLSELLQFTVAQSDNNGCDILFRIMGGPRVVDNYIKS
IGMTDVAIMTTEEQMHKDVKAQFSNWTTPWSAVQLLEKFYQKKILSPASHAFMWQTLTGATTGAQKIKGLLPAGTIVAHK
SGLSGVNSEGITAATNDIGIVTLPNGKHFIISTFYSNTKKSDKESDRVIAEVAKAAFDYFSSK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
bla VEB-1 CAJ77043.1 Betalactamase Not tested AbaR1 Protein 5e-54 43
ABK1_0262 YP_005512834.1 Extended-spectrum beta-lactamase PER-1 precursor Not tested AbaR4d Protein 3e-55 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Runsl_3159 YP_004656672.1 beta-lactamase AY027870.1.gene1.p01 Protein 4e-54 43
Runsl_3159 YP_004656672.1 beta-lactamase NC_010410.6002875.p0 Protein 3e-54 43
Runsl_3159 YP_004656672.1 beta-lactamase AF010416.1.gene1.p01 Protein 3e-54 43
Runsl_3159 YP_004656672.1 beta-lactamase X93314.gene.p01 Protein 1e-54 43
Runsl_3159 YP_004656672.1 beta-lactamase EF136375.1.gene1.p01 Protein 9e-54 42
Runsl_3159 YP_004656672.1 beta-lactamase AY536519.1.gene1.p01 Protein 1e-53 42
Runsl_3159 YP_004656672.1 beta-lactamase EF420108.1.gene1.p01 Protein 8e-54 42
Runsl_3159 YP_004656672.1 beta-lactamase GQ396303.1.gene1.p01 Protein 3e-53 42
Runsl_3159 YP_004656672.1 beta-lactamase FJ627180.1.gene1.p01 Protein 9e-56 41
Runsl_3159 YP_004656672.1 beta-lactamase AY740681.1.gene9.p01 Protein 1e-55 41