Gene Information

Name : Runsl_0028 (Runsl_0028)
Accession : YP_004653620.1
Strain : Runella slithyformis DSM 19594
Genome accession: NC_015703
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 35940 - 36620 bp
Length : 681 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: dfe:Dfer_0452 histidine kinase; PFAM: ATP-binding region, ATPase-li

DNA sequence : 
ATGAAAATTCTTTTGATAGAGGATGATGTAAAAATTATTCAGTCGCTCCGCAAAGGCTTGGAAGAAAACGGATATGACGT
AGATATTGCCTATGATGGTATGATCGGAAAAGTACTTGCCCGCCGAAACGACTATTCCGTGATCGTTTCTGATATCATCA
TTCCGGGAGTTAACGGTGTGCAGCTGTGCCGAGAACTTCGAAATGAAGGAATTCTGACCCCCTTCATCATGCTGACAGCA
CTGGGCGCTCTGGAAGAAAAACTGGTAGGTTTTGACGCGGGCGCAGACGATTATCTGGTCAAACCCTTTGATTTTCTGGA
ACTGTTGGCTCGGATCAAAGTAGTAACCAAACGCATCCAATCAGAGCCTGTCAGTACCAACGTATTACGGTATGCTGACC
TCGAAATGAATCTCACCACCCGGGATGTGACCCGCAGCCATCGTCGCATCGAACTGACCGGCAAGGAATACGCCCTGCTG
GAGTTTTTGCTTCGCAATTCCGAGCGTGTACTCTCCAAGGTAGACATTGCCGAAAAAATCTGGGATATTCGTTTTGATAC
CGGCACCAACATCATCGAAGTCTACATCACGCTGTTGCGCAAAAAAATAGATAAAGATTTTCCGATAAAACTCATTCACA
CGCACTACGGCATCGGCTACGTGCTCAAACAGGAGGCATAA

Protein sequence : 
MKILLIEDDVKIIQSLRKGLEENGYDVDIAYDGMIGKVLARRNDYSVIVSDIIIPGVNGVQLCRELRNEGILTPFIMLTA
LGALEEKLVGFDAGADDYLVKPFDFLELLARIKVVTKRIQSEPVSTNVLRYADLEMNLTTRDVTRSHRRIELTGKEYALL
EFLLRNSERVLSKVDIAEKIWDIRFDTGTNIIEVYITLLRKKIDKDFPIKLIHTHYGIGYVLKQEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-38 45
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-37 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Runsl_0028 YP_004653620.1 winged helix family two component transcriptional regulator BAC0111 Protein 2e-44 47
Runsl_0028 YP_004653620.1 winged helix family two component transcriptional regulator BAC0125 Protein 4e-43 45
Runsl_0028 YP_004653620.1 winged helix family two component transcriptional regulator BAC0347 Protein 6e-40 45
Runsl_0028 YP_004653620.1 winged helix family two component transcriptional regulator BAC0083 Protein 3e-41 44
Runsl_0028 YP_004653620.1 winged helix family two component transcriptional regulator BAC0638 Protein 6e-35 44
Runsl_0028 YP_004653620.1 winged helix family two component transcriptional regulator BAC0308 Protein 2e-39 42
Runsl_0028 YP_004653620.1 winged helix family two component transcriptional regulator BAC0197 Protein 4e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Runsl_0028 YP_004653620.1 winged helix family two component transcriptional regulator VFG0596 Protein 8e-38 43
Runsl_0028 YP_004653620.1 winged helix family two component transcriptional regulator VFG1390 Protein 9e-45 41