Gene Information

Name : Runsl_2442 (Runsl_2442)
Accession : YP_004655979.1
Strain : Runella slithyformis DSM 19594
Genome accession: NC_015703
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2807641 - 2808315 bp
Length : 675 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR003088:IPR005084; KEGG: dfe:Dfer_1484 PKD domain containing protein; PFAM: PKD; Cytochrome c, cl

DNA sequence : 
ATGAAAGTTTTAATTGTTGAAGACGAGCCAAAACTGGCAGGGTTTATAAAAAAAGGACTTGAAGAGCAGGCATGGGAGGT
AGATGTAGCTTTTGACGGTCAAATGGGCAGCAGTTTGGCGCTCTCCAATCCCTACGATGTGATAGTTTTGGACGTCAATT
TACCTAAAATCAATGGCTTTGAACTGGCGGCACTTCTTCGTCGGGAAAACATTCGTACCCCGATCCTAATGCTTACCGCA
CTTGGGACCCTCAACGATAAGTTGGCCGGCTTTGAATCCGGAGCCGATGACTATTTGGTCAAACCATTTGAATTTCAGGA
GCTTATTGTTCGACTGAGAGCCTTACAAAAACGCAACTCAGAAAGCGGACCAACGTCCAATGTCTTAAAAATAGCGAATT
TGGAACTGGACCTAAACGAGCGTATCGCTCGGCGGGATGGACACCGTATCGAGCTGACAGCCAAAGAGTTTGGTTTGTTG
GAGTATTTTATGCGAAATCGTGGTCGAGTGGTGTCGCGGGTAGACATCGCCGAGAAAGTATGGGACATTCATTTTGATAC
CGGCACCAATACCATTGATGTCTATGTTAATTTTCTGCGTAAAAAAATAGACAAAGAATTTGAGCATAAATTGATTCACA
CGGTAGTTGGAATGGGATATATTCTCAAAGAATAA

Protein sequence : 
MKVLIVEDEPKLAGFIKKGLEEQAWEVDVAFDGQMGSSLALSNPYDVIVLDVNLPKINGFELAALLRRENIRTPILMLTA
LGTLNDKLAGFESGADDYLVKPFEFQELIVRLRALQKRNSESGPTSNVLKIANLELDLNERIARRDGHRIELTAKEFGLL
EYFMRNRGRVVSRVDIAEKVWDIHFDTGTNTIDVYVNFLRKKIDKEFEHKLIHTVVGMGYILKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-38 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-37 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Runsl_2442 YP_004655979.1 winged helix family two component transcriptional regulator BAC0111 Protein 9e-50 51
Runsl_2442 YP_004655979.1 winged helix family two component transcriptional regulator BAC0125 Protein 7e-46 48
Runsl_2442 YP_004655979.1 winged helix family two component transcriptional regulator BAC0083 Protein 1e-44 48
Runsl_2442 YP_004655979.1 winged helix family two component transcriptional regulator BAC0197 Protein 2e-43 48
Runsl_2442 YP_004655979.1 winged helix family two component transcriptional regulator BAC0347 Protein 2e-44 47
Runsl_2442 YP_004655979.1 winged helix family two component transcriptional regulator BAC0638 Protein 2e-38 46
Runsl_2442 YP_004655979.1 winged helix family two component transcriptional regulator Y16952.3.orf35.gene. Protein 2e-24 45
Runsl_2442 YP_004655979.1 winged helix family two component transcriptional regulator BAC0308 Protein 9e-41 44
Runsl_2442 YP_004655979.1 winged helix family two component transcriptional regulator U82965.2.orf14.gene. Protein 3e-29 44
Runsl_2442 YP_004655979.1 winged helix family two component transcriptional regulator HE999704.1.gene1528. Protein 3e-32 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Runsl_2442 YP_004655979.1 winged helix family two component transcriptional regulator VFG0596 Protein 2e-38 43