Gene Information

Name : Runsl_1972 (Runsl_1972)
Accession : YP_004655522.1
Strain : Runella slithyformis DSM 19594
Genome accession: NC_015703
Putative virulence/resistance : Virulence
Product : phosphonate-transporting ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2273852 - 2274529 bp
Length : 678 bp
Strand : -
Note : PFAM: ABC transporter; InterPro IPR008815; KEGG: paa:Paes_1770 hypothetical protein; PFAM: 23S rRNA-associated protein; SPTR: S23 ribosomal protein

DNA sequence : 
ATGATAAAAACAGCTAACCTCCAGAAAATCTTCACTACCGAAGAAGTTGAAACAACAGCCCTGAACGGAATTGATTTGGA
AGTAAAAGACGGCGAATTTGTCGCCATCATGGGCCCTTCCGGCTGCGGCAAGTCCACGCTCCTTAACATTTTGGGGCTTT
TGGATAATCCCAGCGAAGGCAGCTACGATTTCCACGGCACCGAGGTAGCCAAGCTGTCGGAACGTCAACGGGCGCAATTG
CGTAAAGGAAACATCGGATTCGTGTTCCAGAGCTTCAACCTCATCGACGAACTGACCGTGTATGAAAACGTCGAACTTCC
GCTGCTGTACCTCAAAGTACCCGCCGACCAGCGCAAGGAAATGGTCGAAACGGTACTGACACGCATGAACATCATGCACC
GCCGCAATCACTTTCCGCAGCAACTCTCCGGGGGACAGCAACAGCGGACCGCCATTGCCCGTGCGGTAGTGGCCAAGCCT
AAACTGATCCTGGCGGATGAGCCTACGGGAAACCTGGACTCGGCCAACGGCGAAGAGGTCATGAAACTCCTTTCGCAACT
CAACGATGAAGGCACCAGCATCATCATGGTGACCCACTCACCGTACGATGCCGGGTTTGCGCACCGTATCGTCAATTTGT
TTGACGGTAAAGTGGTGACCGAGAAAATGCGCGTATAA

Protein sequence : 
MIKTANLQKIFTTEEVETTALNGIDLEVKDGEFVAIMGPSGCGKSTLLNILGLLDNPSEGSYDFHGTEVAKLSERQRAQL
RKGNIGFVFQSFNLIDELTVYENVELPLLYLKVPADQRKEMVETVLTRMNIMHRRNHFPQQLSGGQQQRTAIARAVVAKP
KLILADEPTGNLDSANGEEVMKLLSQLNDEGTSIIMVTHSPYDAGFAHRIVNLFDGKVVTEKMRV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-33 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-33 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-33 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-33 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Runsl_1972 YP_004655522.1 phosphonate-transporting ATPase NC_012469.1.7686878. Protein 5e-51 50
Runsl_1972 YP_004655522.1 phosphonate-transporting ATPase NC_008702.1.4606598. Protein 8e-42 49
Runsl_1972 YP_004655522.1 phosphonate-transporting ATPase CP001581.1.gene798.p Protein 1e-36 45
Runsl_1972 YP_004655522.1 phosphonate-transporting ATPase NC_012469.1.7686946. Protein 5e-32 42
Runsl_1972 YP_004655522.1 phosphonate-transporting ATPase NC_012469.1.7685735. Protein 6e-35 42
Runsl_1972 YP_004655522.1 phosphonate-transporting ATPase CP001581.1.gene598.p Protein 4e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Runsl_1972 YP_004655522.1 phosphonate-transporting ATPase VFG2059 Protein 9e-20 41