Gene Information

Name : Runsl_1813 (Runsl_1813)
Accession : YP_004655369.1
Strain : Runella slithyformis DSM 19594
Genome accession: NC_015703
Putative virulence/resistance : Resistance
Product : major facilitator superfamily protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2814
EC number : -
Position : 2056965 - 2058173 bp
Length : 1209 bp
Strand : +
Note : PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein

DNA sequence :
ATGGCCGCAAAACGTAATTCTGCACTTACCTTTATCTTCATAACTCTACTCATCGACATCACCGGCATCGGAATTATTGT
CCCTGTCGTACCGAGGCTTATCCAGGAATTAACGGGCGAAGGTCTCTCTAAAGCTGCGCTTTACGGAGGTTGGCTGACGT
TCATTTACTCTGTTATGCAATTTGTCTTTTCTCCAATTTTAGGAGGATTGAGCGATCAATATGGCCGTCGTCCCGTCTTA
TTGGGTTCTTTGTTCGGCTTTGGCGTAGATTATATATTTTGTGCGTTTACTTCTACGATAGGGTGGCTCTTTTTAGCAAG
AGTAATAGCCGGTATTTTGGGAGCAAGTTTTTCAACGGCCGGCGCGTACATTGCCGATGTAAGCCCTCCGGAAAAACGTG
CTCAAAATTTCGGTTTGATTGGTGCGGCATTCGGATTGGGCTTTATTCTTGGACCAATGATAGGAGGATTGTTGGGCCAG
TACGGGCCGCGTGTCCCTTTTTTGGTGTCTGCCGGATTGAGTTTGCTCAATTGCCTTTACGGTTATTTTGTATTGCCCGA
ATCGCTCGAACCTAAAAATCGACGCCCCTTTGACTGGAAGCGAGCCAATCCTGTCGGCTCATTACGTCATTTACAGCGAT
ACCCCGTTATTTTTGGACTCATCATTCCATTGATTCTGATCTATATTGCCGGCTATTCTACGCAAAGTACGTGGACCTAT
TTTACCATGGAAAAATTTGGATGGGACGAAAAATGGGTCGGTTATTCTTTAGCCTTTGTCGGACTGATGGCGGCACTGGT
ACAGGGAGGGCTAACGCGCACCATTATTCCGAAGTTAGGAAATATCAAATCCATCTATTGGGGACTTGCCTGCTATGGCG
TCAGCTTTCTGTTATATGCTTTTGCCAATAAAGGCTGGATGATGTTTGCCATTACCGTTATGTCGGCATTGGGAGGGATT
GCCACGCCGGCGTTGCAGGCAATCATGTCAAATGAAGTGCCTCCCAACGAGCAGGGCGAACTTCGGGGAGCGCTTACCGG
CCTGATGAGCCTGACGGCCATTTTGGGCCCCGTTATGATGACCGCTCTTTTTGCCTATTTCACCTCCCCTTCAGCGCCTT
TTCAGTTTGCGGGAGCGCCTTTTATGATGGCCGCTGTTCTAATCCTTTTCAGTTTCATTTCTGTAAAGAAAATATTGACC
AAAAGCTGA

Protein sequence :
MAAKRNSALTFIFITLLIDITGIGIIVPVVPRLIQELTGEGLSKAALYGGWLTFIYSVMQFVFSPILGGLSDQYGRRPVL
LGSLFGFGVDYIFCAFTSTIGWLFLARVIAGILGASFSTAGAYIADVSPPEKRAQNFGLIGAAFGLGFILGPMIGGLLGQ
YGPRVPFLVSAGLSLLNCLYGYFVLPESLEPKNRRPFDWKRANPVGSLRHLQRYPVIFGLIIPLILIYIAGYSTQSTWTY
FTMEKFGWDEKWVGYSLAFVGLMAALVQGGLTRTIIPKLGNIKSIYWGLACYGVSFLLYAFANKGWMMFAITVMSALGGI
ATPALQAIMSNEVPPNEQGELRGALTGLMSLTAILGPVMMTALFAYFTSPSAPFQFAGAPFMMAAVLILFSFISVKKILT
KS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 3e-45 42
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 4e-45 42
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 3e-45 42
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 3e-45 42
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 2e-45 42
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 3e-45 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Runsl_1813 YP_004655369.1 major facilitator superfamily protein NC_011586.7045189.p0 Protein 3e-45 42
Runsl_1813 YP_004655369.1 major facilitator superfamily protein AY264780.2.gene3.p01 Protein 7e-46 42
Runsl_1813 YP_004655369.1 major facilitator superfamily protein AF090987.gene.p01 Protein 2e-42 42
Runsl_1813 YP_004655369.1 major facilitator superfamily protein CP001485.1.gene2821. Protein 1e-45 42
Runsl_1813 YP_004655369.1 major facilitator superfamily protein AF534183.gene.p01 Protein 1e-45 42
Runsl_1813 YP_004655369.1 major facilitator superfamily protein NC_010410.6002597.p0 Protein 1e-45 42
Runsl_1813 YP_004655369.1 major facilitator superfamily protein Y19114.gene.p01 Protein 1e-44 41
Runsl_1813 YP_004655369.1 major facilitator superfamily protein X75761.gene.p01 Protein 8e-45 41